View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7830_low_6 (Length: 335)
Name: NF7830_low_6
Description: NF7830
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7830_low_6 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 305; Significance: 1e-172; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 305; E-Value: 1e-172
Query Start/End: Original strand, 11 - 335
Target Start/End: Complemental strand, 38180861 - 38180537
Alignment:
| Q |
11 |
atggacatcacttgtataaaaacacttggcttatgctatccatccatatacatgcataaccgttgcatatcacacttcctttactctactggttcgtgct |
110 |
Q |
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| T |
38180861 |
atggacaccacttgtataaaaacacttagcttatgctatccatccatatacattcataaccgttgcatatcacacttcctttactctactggttcgtgct |
38180762 |
T |
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| Q |
111 |
attgcattttcacaagccaccactaccatggcgcaaaaccaccacttcctcatcatcacatacccactacacggtcacataaaccctgctctccaattcg |
210 |
Q |
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| T |
38180761 |
attgcattttcacaagccaccactaccatggcgcaaaaccaccacttcctcatcatcacatacccactacacggtcacataaaccctgctctccaattcg |
38180662 |
T |
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| Q |
211 |
ccaagcgtctcatttctttgggcgcacaagtcacttttgctaccactatctacttacacactcgccttaccaacaaatcaaccatcccgggcctttcctt |
310 |
Q |
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| T |
38180661 |
ccaaacgtctcatttctttgggcgcacaagtcacttttgctaccactatctacttacacactcgccttaccaacaaatcaaccatctcgggcctttcctt |
38180562 |
T |
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| Q |
311 |
cgccaccttctctgacggccacgac |
335 |
Q |
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| T |
38180561 |
cgccaccttctctgacggccacgac |
38180537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 106 - 335
Target Start/End: Complemental strand, 38185435 - 38185206
Alignment:
| Q |
106 |
gtgctattgcattttcacaagccaccactaccatggcgcaaaaccaccacttcctcatcatcacatacccactacacggtcacataaaccctgctctcca |
205 |
Q |
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| T |
38185435 |
gtgctattgcattttcacaagccaccattaccatggcgcaaaaccaccacttcctcatcatcacatacccactacacggtcacataaaccctgcactcca |
38185336 |
T |
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| Q |
206 |
attcgccaagcgtctcatttctttgggcgcacaagtcacttttgctaccactatctacttacacactcgccttaccaacaaatcaaccatcccgggcctt |
305 |
Q |
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| T |
38185335 |
attcgccaagcgtctcatttctttcggcgcacaagtcacttttgctacaactatctacttacacactggccttatcaacaaaccaaccatcccaggcctc |
38185236 |
T |
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| Q |
306 |
tccttcgccaccttctctgacggccacgac |
335 |
Q |
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| T |
38185235 |
tccttcgccaccttctctgatggctacgac |
38185206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 171; E-Value: 8e-92
Query Start/End: Original strand, 111 - 329
Target Start/End: Complemental strand, 38170947 - 38170729
Alignment:
| Q |
111 |
attgcattttcacaagccaccactaccatggcgcaaaaccaccacttcctcatcatcacatacccactacacggtcacataaaccctgctctccaattcg |
210 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||||||| |
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| T |
38170947 |
attgcattttcacaatccaccactaccatggcgcaaaaccaccacttcctcatcataacatacccactacaaggtcacataaaccctgccctccaattca |
38170848 |
T |
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| Q |
211 |
ccaagcgtctcatttctttgggcgcacaagtcacttttgctaccactatctacttacacactcgccttaccaacaaatcaaccatcccgggcctttcctt |
310 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| ||| |||||||| ||||||| |||||||||||||||| ||||| |
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| T |
38170847 |
ccaagcgtctcatttctttgggcgcaaaagtcacttttgctaccactatccacttatacagtcgccttatcaacaaaccaaccatcccgggcctctcctt |
38170748 |
T |
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| Q |
311 |
cgccaccttctctgacggc |
329 |
Q |
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| T |
38170747 |
cgccaccttctctgacggc |
38170729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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