View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7830_low_8 (Length: 308)
Name: NF7830_low_8
Description: NF7830
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7830_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 281; Significance: 1e-157; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 1 - 289
Target Start/End: Complemental strand, 46292325 - 46292037
Alignment:
| Q |
1 |
ttccagagctggaccataaagcaaactacaactataatgtaagacagttgtagcaaaggtaaaattctacattttctattaaaaacctaaagtgaataca |
100 |
Q |
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| T |
46292325 |
ttccagagctggaccataaagcaaattacaactataatgtaagacagttgtagcaaaggtaaaattctacattttctattaaaaacctaaagtgaataca |
46292226 |
T |
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| Q |
101 |
gataaaattctacctgataaagtttaacaacatgttgtagaccggcttttcccttctgaagattgtgcaccagtcgctcaatgtctgatattcttttcag |
200 |
Q |
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| T |
46292225 |
gataaaattctacctgataaagtttaacaacatgttgtagaccagcttttcccttctgaagattgtgcaccagtcgctcaatgtctgatattcttttcag |
46292126 |
T |
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| Q |
201 |
atgctgtctcagatcttggcgaagcacggtgtcctctacaaatgcttgtactacatccaacctggagttaatatcgtttacatctaata |
289 |
Q |
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| T |
46292125 |
atgctgtctcagatcttggcgaagcacggtgtcctctacaaatgcttgtactacatccaacctggagttaatatcgtttacatctaata |
46292037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 5 - 79
Target Start/End: Complemental strand, 46292917 - 46292844
Alignment:
| Q |
5 |
agagctggaccataaagcaaactacaactataatgtaagacagttgtagcaaaggtaaaattctacattttctat |
79 |
Q |
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||||||| | || |||||||| ||||| || ||||||||||| | |||||||||| |||||||||||||||||| |
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| T |
46292917 |
agagctgaatcacaaagcaaa-tacaaatacaatgtaagacaatcatagcaaaggtcaaattctacattttctat |
46292844 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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