View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7831_high_10 (Length: 253)
Name: NF7831_high_10
Description: NF7831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7831_high_10 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 219; Significance: 1e-120; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 16 - 253
Target Start/End: Original strand, 32804630 - 32804874
Alignment:
| Q |
16 |
aaatgaacctttcactgttccctttcttctccctctca-------tgcttccttaagcgctgccgtgaaggtcaatgactccgccgtgatccaccaccac |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32804630 |
aaatgaacctttcactgttccctttcttctccctctcacgttttctgcttccttaagcgctgccgtgaaggtcaatgactccgccgtgatccaccaccac |
32804729 |
T |
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| Q |
109 |
tgtgtctttgttcttcttattactcacaaaacatctgaaagaaaacacaatagagacgctccaaaagagatcatgtagttcatgaaaacatctctgcttg |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32804730 |
tgtgtctttgttcttcttattactcacaaaacatctgaaagaaaacacaatagagacgctccaaaagagatcatgtagttcatgaaaacatctctgcttg |
32804829 |
T |
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| Q |
209 |
tcatctttcgtccgacatgatgtttcgacaaggctcgttacctcc |
253 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32804830 |
tcatctttcgtccgacatgatgtttcgacaaggctcgttacctcc |
32804874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 92 - 179
Target Start/End: Original strand, 34153313 - 34153397
Alignment:
| Q |
92 |
ccgtgatccaccaccactgtgtctttgttcttcttattactcacaaaacatctgaaagaaaacacaatagagacgctccaaaagagat |
179 |
Q |
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| T |
34153313 |
ccgtgatccgccgccaccgtgtctttgttct---tattactcataaaacatctgaaagaaaaaacaacagagacactccaagagagat |
34153397 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 120
Target Start/End: Complemental strand, 48167271 - 48167237
Alignment:
| Q |
86 |
actccgccgtgatccaccaccactgtgtctttgtt |
120 |
Q |
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| T |
48167271 |
actccgccgtgatccaccaccaccgtgtctttgtt |
48167237 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 68 - 172
Target Start/End: Complemental strand, 7317846 - 7317745
Alignment:
| Q |
68 |
ctgccgtgaaggtcaatgactccgccgtgatccaccaccactgtgtctttgttcttcttattactcacaaaacatctgaaagaaaacacaatagagacgc |
167 |
Q |
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||||| ||||| |||| |||| |||||||||| || |||| ||||||||||||| |||||||| |||||||||||||||||| |||| |||||||| |
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| T |
7317846 |
ctgccatgaagaccaatcactctgccgtgatccgccgccaccgtgtctttgttcta---attactcataaaacatctgaaagaaaaaacaacagagacgc |
7317750 |
T |
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| Q |
168 |
tccaa |
172 |
Q |
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||||| |
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| T |
7317749 |
tccaa |
7317745 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 68 - 179
Target Start/End: Original strand, 17037491 - 17037599
Alignment:
| Q |
68 |
ctgccgtgaaggtcaatgactccgccgtgatccaccaccactgtgtctttgttcttcttattactcacaaaacatctgaaagaaaacacaatagagacgc |
167 |
Q |
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||||| ||||| |||| |||| |||||||||| || |||| ||||||||||||| ||||||||| |||||||||||||||||| ||| |||||| | |
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| T |
17037491 |
ctgccatgaagaccaatcactctgccgtgatccgccgccaccgtgtctttgttct---tattactcataaaacatctgaaagaaaaaacatcagagacac |
17037587 |
T |
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| Q |
168 |
tccaaaagagat |
179 |
Q |
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||||| |||||| |
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| T |
17037588 |
tccaagagagat |
17037599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 120
Target Start/End: Complemental strand, 46654437 - 46654403
Alignment:
| Q |
86 |
actccgccgtgatccaccaccactgtgtctttgtt |
120 |
Q |
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|||| |||||||||||||||||||||||||||||| |
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| T |
46654437 |
actctgccgtgatccaccaccactgtgtctttgtt |
46654403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 120
Target Start/End: Complemental strand, 1253273 - 1253239
Alignment:
| Q |
86 |
actccgccgtgatccaccaccactgtgtctttgtt |
120 |
Q |
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|||||||||| |||||||||||||||||||||||| |
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| T |
1253273 |
actccgccgtcatccaccaccactgtgtctttgtt |
1253239 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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