View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7831_high_3 (Length: 501)

Name: NF7831_high_3
Description: NF7831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7831_high_3
NF7831_high_3
[»] chr3 (4 HSPs)
chr3 (11-487)||(52633573-52634039)
chr3 (89-141)||(22515747-22515798)
chr3 (89-141)||(25313472-25313523)
chr3 (89-141)||(48905668-48905719)
[»] chr2 (3 HSPs)
chr2 (89-153)||(10728327-10728390)
chr2 (89-141)||(25187046-25187097)
chr2 (89-141)||(39778686-39778737)
[»] chr8 (1 HSPs)
chr8 (89-141)||(32305816-32305867)
[»] chr7 (1 HSPs)
chr7 (89-141)||(23320010-23320061)
[»] chr6 (3 HSPs)
chr6 (89-141)||(1365753-1365804)
chr6 (89-141)||(7243450-7243501)
chr6 (89-141)||(24338046-24338097)
[»] chr4 (3 HSPs)
chr4 (89-141)||(782901-782952)
chr4 (89-141)||(30537665-30537716)
chr4 (89-141)||(36187427-36187478)
[»] chr1 (3 HSPs)
chr1 (89-141)||(9411836-9411887)
chr1 (89-141)||(16129998-16130049)
chr1 (89-141)||(16130548-16130599)


Alignment Details
Target: chr3 (Bit Score: 396; Significance: 0; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 11 - 487
Target Start/End: Original strand, 52633573 - 52634039
Alignment:
Q  11 acatcaaaccatgatagatccaaataactcagtaaaaagtgcatccctatcaacatcaaatatatatgtattactctcattccaccaacttacttactcc 110  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52633573 acatcaaaccatgatagacccaaataactcagtaaaaagtgcatccctatcaacatcaaatatatatgtattactctcattccaccaacttacttactcc 52633672  T
Q  111 taatattctctcccaataagaaataagggcatgaattaaattttgcattaaatacttttaaaaaatgtcaacattgtttagtaaaaaggaacaaatgaat 210  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52633673 taatattctctcccaataagaaataagggcatggattaaattttgcattaaatacttttaaaaaatgtcaacattgtttagtaaaaaggaacaaatgaat 52633772  T
Q  211 gagcatttttgtttttgtttataaaaaaggatctgaggaagtaatatattaagtatctatgtcattttgcagtaatataaagaattattttgtagaacaa 310  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52633773 gagcatttttgtttttgtttataaaaaaggatctgaggaagtaatatattaagtatctatgtcattttgcagtaatataaagaattattttgtagaacaa 52633872  T
Q  311 ttgggaagtgcaatgcagcaatggcatttgatatgtagaattgatgcgtaggatgtcagttcaaatccaagattcttcatttatttgagttttgtcattg 410  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||          |||||||||||||||    
T  52633873 ttgggaagtgcaatgcagcaatggcatttgatatgtagaattgatgcgtagaatgtcagttcaaatccaagattc----------tgagttttgtcattg 52633962  T
Q  411 aactctatgagaaggnnnnnnnnnnctacataatagcgtgtgagtgatcgtaaaggggcaatacttgtcttgtttat 487  Q
    |||||| ||||||||          ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52633963 aactctttgagaaggaaaaaaaaaactacataatagcgtgtgagtgatcgtaaaggggcaatacttgtcttgtttat 52634039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 89 - 141
Target Start/End: Complemental strand, 22515798 - 22515747
Alignment:
Q  89 attccaccaacttacttactcctaatattctctcccaataagaaataagggca 141  Q
    ||||||||||||||||||||  |||||||||||| | |||| |||||||||||    
T  22515798 attccaccaacttacttacttttaatattctctctc-ataataaataagggca 22515747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 89 - 141
Target Start/End: Complemental strand, 25313523 - 25313472
Alignment:
Q  89 attccaccaacttacttactcctaatattctctcccaataagaaataagggca 141  Q
    ||||||||||||||||||||  |||||||||||| | |||| |||||||||||    
T  25313523 attccaccaacttacttacttttaatattctctctc-ataataaataagggca 25313472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 89 - 141
Target Start/End: Original strand, 48905668 - 48905719
Alignment:
Q  89 attccaccaacttacttactcctaatattctctcccaataagaaataagggca 141  Q
    ||||||||||||||||||||  |||||||||||| | |||| |||||||||||    
T  48905668 attccaccaacttacttacttttaatattctctctc-ataataaataagggca 48905719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 89 - 153
Target Start/End: Original strand, 10728327 - 10728390
Alignment:
Q  89 attccaccaacttacttactcctaatattctctcccaataagaaataagggcatgaattaaattt 153  Q
    ||||||||||||||||||||  |||||||||||| | |||| |||||||||||| ||| ||||||    
T  10728327 attccaccaacttacttacttttaatattctctctc-ataataaataagggcataaatgaaattt 10728390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 89 - 141
Target Start/End: Complemental strand, 25187097 - 25187046
Alignment:
Q  89 attccaccaacttacttactcctaatattctctcccaataagaaataagggca 141  Q
    ||||||||||||||||||||  |||||||||||| | |||| |||||||||||    
T  25187097 attccaccaacttacttacttttaatattctctctc-ataataaataagggca 25187046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 89 - 141
Target Start/End: Original strand, 39778686 - 39778737
Alignment:
Q  89 attccaccaacttacttactcctaatattctctcccaataagaaataagggca 141  Q
    ||||||||||||||||||||  |||||||||||| | |||| |||||||||||    
T  39778686 attccaccaacttacttacttttaatattctctctc-ataataaataagggca 39778737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 89 - 141
Target Start/End: Complemental strand, 32305867 - 32305816
Alignment:
Q  89 attccaccaacttacttactcctaatattctctcccaataagaaataagggca 141  Q
    ||||||||||||||||||||  |||||||||||| | |||| |||||||||||    
T  32305867 attccaccaacttacttacttttaatattctctctc-ataataaataagggca 32305816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 89 - 141
Target Start/End: Original strand, 23320010 - 23320061
Alignment:
Q  89 attccaccaacttacttactcctaatattctctcccaataagaaataagggca 141  Q
    ||||||||||||||||||||  |||||||||||| | |||| |||||||||||    
T  23320010 attccaccaacttacttacttttaatattctctctc-ataataaataagggca 23320061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000007; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 89 - 141
Target Start/End: Complemental strand, 1365804 - 1365753
Alignment:
Q  89 attccaccaacttacttactcctaatattctctcccaataagaaataagggca 141  Q
    ||||||||||||||||||||  |||||||||||| | |||| |||||||||||    
T  1365804 attccaccaacttacttacttttaatattctctctc-ataataaataagggca 1365753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 89 - 141
Target Start/End: Original strand, 7243450 - 7243501
Alignment:
Q  89 attccaccaacttacttactcctaatattctctcccaataagaaataagggca 141  Q
    ||||||||||||||||||||  |||||||||||| | |||| |||||||||||    
T  7243450 attccaccaacttacttacttttaatattctctctc-ataataaataagggca 7243501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 89 - 141
Target Start/End: Original strand, 24338046 - 24338097
Alignment:
Q  89 attccaccaacttacttactcctaatattctctcccaataagaaataagggca 141  Q
    ||||||||||||||||||||  |||||||||||| | |||| |||||||||||    
T  24338046 attccaccaacttacttacttttaatattctctctc-ataataaataagggca 24338097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 89 - 141
Target Start/End: Complemental strand, 782952 - 782901
Alignment:
Q  89 attccaccaacttacttactcctaatattctctcccaataagaaataagggca 141  Q
    ||||||||||||||||||||  |||||||||||| | |||| |||||||||||    
T  782952 attccaccaacttacttacttttaatattctctctc-ataataaataagggca 782901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 89 - 141
Target Start/End: Original strand, 30537665 - 30537716
Alignment:
Q  89 attccaccaacttacttactcctaatattctctcccaataagaaataagggca 141  Q
    ||||||||||||||||||||  |||||||||||| | |||| |||||||||||    
T  30537665 attccaccaacttacttacttttaatattctctctc-ataataaataagggca 30537716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 89 - 141
Target Start/End: Complemental strand, 36187478 - 36187427
Alignment:
Q  89 attccaccaacttacttactcctaatattctctcccaataagaaataagggca 141  Q
    ||||||||||||||||||||  |||||||||||| | |||| |||||||||||    
T  36187478 attccaccaacttacttacttttaatattctctctc-ataataaataagggca 36187427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000007; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 89 - 141
Target Start/End: Complemental strand, 9411887 - 9411836
Alignment:
Q  89 attccaccaacttacttactcctaatattctctcccaataagaaataagggca 141  Q
    ||||||||||||||||||||  |||||||||||| | |||| |||||||||||    
T  9411887 attccaccaacttacttacttttaatattctctctc-ataataaataagggca 9411836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 89 - 141
Target Start/End: Original strand, 16129998 - 16130049
Alignment:
Q  89 attccaccaacttacttactcctaatattctctcccaataagaaataagggca 141  Q
    ||||||||||||||||||||  |||||||||||| | |||| |||||||||||    
T  16129998 attccaccaacttacttacttttaatattctctctc-ataataaataagggca 16130049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 89 - 141
Target Start/End: Original strand, 16130548 - 16130599
Alignment:
Q  89 attccaccaacttacttactcctaatattctctcccaataagaaataagggca 141  Q
    ||||||||||||||||||||  |||||||||||| | |||| |||||||||||    
T  16130548 attccaccaacttacttacttttaatattctctctc-ataataaataagggca 16130599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University