View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7831_high_4 (Length: 370)
Name: NF7831_high_4
Description: NF7831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7831_high_4 |
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Alignment Details
Target: chr6 (Bit Score: 84; Significance: 8e-40; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 47 - 259
Target Start/End: Complemental strand, 12849859 - 12849636
Alignment:
| Q |
47 |
attttttaaagatttttctacaaggtcaatttgaacaattaacatt-ataattttttaataagtgaaatgtgaattattgagaccaagtaaac------- |
138 |
Q |
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| T |
12849859 |
attttctatagatttctctacaaggtcaatttgaacaattaacctttataattttttaataagtgaaat------tatagagaccaagtaaacaacaaat |
12849766 |
T |
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| Q |
139 |
---ttggagatggaggccagtacgttgaaacatcttcagtaccacctgcataa-gctctaaacttaagctcttcaacccctccttcaaaataccatatg- |
233 |
Q |
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|||||||||||||||| ||| |||||||||||||| |||| ||| |||| |||||||||| ||||||||||| |||||||||||||||||||||| |
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| T |
12849765 |
ttattggagatggaggccaatacattgaaacatcttcaatacctccttaataaagctctaaactcaagctcttcaatccctccttcaaaataccatatgc |
12849666 |
T |
|
| Q |
234 |
----ccataatcactttcatcatcataata |
259 |
Q |
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|||||||||||||||||||||||||| |
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| T |
12849665 |
catgccataatcactttcatcatcataata |
12849636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 47 - 259
Target Start/End: Complemental strand, 12882455 - 12882232
Alignment:
| Q |
47 |
attttttaaagatttttctacaaggtcaatttgaacaattaacattataattttttaataagtgaaatgtg--aattattgagaccaagtaaact----- |
139 |
Q |
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| T |
12882455 |
attttctatagatttctctacatggtcaatttgaacaattaaccctaaaatattt-aataagtgaaatgtgtgaattatggaggccaagtaaacagcaaa |
12882357 |
T |
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| Q |
140 |
-----tggagatggaggccagtacgttgaaacatcttcagtaccacctgcataagctctaaacttaagctcttcaacccctccttcaaaataccatatgc |
234 |
Q |
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| T |
12882356 |
gttcatggagatggaggccaatacattgcaacatctttaatgcctcctccataaaccctaaactcaatctcttcaatccgtccttcaaaatatcatatgc |
12882257 |
T |
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| Q |
235 |
cataatcactttcatcatcataata |
259 |
Q |
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||| ||||||||||| || |||||| |
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| T |
12882256 |
catcatcactttcataataataata |
12882232 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 207 - 259
Target Start/End: Original strand, 12098641 - 12098693
Alignment:
| Q |
207 |
tcaacccctccttcaaaataccatatgccataatcactttcatcatcataata |
259 |
Q |
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|||| |||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
12098641 |
tcaatccctccttcaaaatacgatatgccataatcactttcatcatcataata |
12098693 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 298 - 354
Target Start/End: Original strand, 12098851 - 12098907
Alignment:
| Q |
298 |
aaacagtgcaacattccttctcatgtggatgactagtcatatgctacaatatgtttt |
354 |
Q |
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| T |
12098851 |
aaacaatgcaacattccttctcttgtggatgactagtcatatgctacaatatctttt |
12098907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 65 - 259
Target Start/End: Original strand, 11797211 - 11797414
Alignment:
| Q |
65 |
tacaaggtcaatttgaacaattaacattataattttttaataagtgaaatgtgaattattgagaccaagtaaact----------tggagatggaggcca |
154 |
Q |
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| T |
11797211 |
tacaaggtcaatttgaataattaaccctataattttt-aataagggaaatgtgtattatggagtccaaagaaacaacacaattcatggagatggaggcca |
11797309 |
T |
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| Q |
155 |
gtacgttgaaacatcttcagtaccacctgcataagctctaaacttaagctcttcaacccctccttcaaaataccatatgccataatcactttcatcatca |
254 |
Q |
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||| ||||| |||||| | |||| ||| ||||| | |||| | || |||||||| | ||||||||| || | |||| ||| |||||||||||||||| |
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| T |
11797310 |
atacattgaagcatctttaatacctcctacataaaccttaaagtcaaactcttcaatctctccttcaaggtatcttatgtcatcatcactttcatcatca |
11797409 |
T |
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| Q |
255 |
taata |
259 |
Q |
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||||| |
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| T |
11797410 |
taata |
11797414 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 68 - 100
Target Start/End: Original strand, 25709731 - 25709763
Alignment:
| Q |
68 |
aaggtcaatttgaacaattaacattataatttt |
100 |
Q |
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| T |
25709731 |
aaggtcaatttgaacaattaaccttataatttt |
25709763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 144 - 256
Target Start/End: Complemental strand, 27072802 - 27072690
Alignment:
| Q |
144 |
gatggaggccagtacgttgaaacatcttcagtaccacctgcataagctctaaacttaagctcttcaacccctccttcaaaataccatatgccataatcac |
243 |
Q |
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||||||||||| ||| ||| | ||||||| ||| ||||||||||| || |||| |||||||||| ||||||| | |||||| ||||||| ||| | |
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| T |
27072802 |
gatggaggccaatacattgcagcatcttcgacacctcctgcataagccctgaactctagctcttcaatccctcctagatgataccaaatgccatcatcgc |
27072703 |
T |
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| Q |
244 |
tttcatcatcata |
256 |
Q |
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| T |
27072702 |
tgtcatcatcata |
27072690 |
T |
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