View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7831_high_5 (Length: 358)
Name: NF7831_high_5
Description: NF7831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7831_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 312; Significance: 1e-176; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 1 - 343
Target Start/End: Complemental strand, 26232414 - 26232069
Alignment:
| Q |
1 |
tcttgatggaagggatcatttaacttagaccttaaagtgaaaaccataccactcatacacatgcctcaacaccagcactactac---caacaaactaccc |
97 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
26232414 |
tcttgatggaagggatcattcaacttagaccttaaagtgaaaaccataccactcatacacatgcctcaacaccagcactactactaccaacaaactaccc |
26232315 |
T |
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| Q |
98 |
aaagaaacaccagccaaaaactcatccagcagctgccgtgtgcaaaaagcagaaactgaactgcagacaacagcaacatactagcccaaacagcaaaatc |
197 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
26232314 |
aaagaaacaccagccaaaaactcatccagcagctgccgtgtgcaaaaagcagaaactgaactgcagacaacagcaacatactagcccaaacagcaaaaac |
26232215 |
T |
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| Q |
198 |
cagcatcctgccgacacaaaaattgggctgacaaccaaacctgcaagcccagaacagcaggatactaagaacagcccctgcactacaaattgcacctcct |
297 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
26232214 |
cagcatcctgctgacacaaaaattgggctgacaaccaaacctgcaagcccagaacagcaggatactaagaacagcccctgcactacaacttgcacctcct |
26232115 |
T |
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| Q |
298 |
ctgtccaaatcccctacctcgtaagacattcttgcggattccaact |
343 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
26232114 |
ctgtccaaatcccctacctcgtaagacattcttgtggattccaact |
26232069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 52 - 343
Target Start/End: Complemental strand, 26209805 - 26209511
Alignment:
| Q |
52 |
ctcatacacatgcctcaacaccagcactactac---caacaaactacccaaagaaacaccagccaaaaactcatccagcagctgccgtgtgcaaaaagca |
148 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26209805 |
ctcatacacatgcctcaacaccagcactactactaccaacaaactacccaaagaaacaccagccaaaaactcatccagcagctgccgtgtgcaaaaagca |
26209706 |
T |
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| Q |
149 |
gaaactgaactgcagacaacagcaacatactagcccaaacagcaaaatccagcatcctgccgacacaaaaattgggctgacaaccaaacctgcaagccca |
248 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
26209705 |
gaaactgaactgcagacaacagcaacatactagcccaaacagcaaaaaccagcatcctgctgacacaaaaattgggctgacaaccaaacctgcaagccca |
26209606 |
T |
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| Q |
249 |
gaacagcaggatactaagaacagcccctgcactacaaattgcacctcctctgtccaaatcccctacctcgtaagacattcttgcggattccaact |
343 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
26209605 |
gaacagcaggatactaagaacagcccctgcactacaacttgcacctcctctgtccaaatcccctacctcgtaagacattcttgtggattccaact |
26209511 |
T |
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