View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7831_high_6 (Length: 298)
Name: NF7831_high_6
Description: NF7831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7831_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 221; Significance: 1e-121; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 62 - 282
Target Start/End: Complemental strand, 33104200 - 33103980
Alignment:
| Q |
62 |
gtagttgtgattgtgtcgataatgcatgttacaaagatttcacagagagaactgggtattttgacaaaagcatatatgcatggttataattgttgaatta |
161 |
Q |
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| T |
33104200 |
gtagttgtgattgtgtcgataatgcatgttacaaagatttcacagagagaactgggtattttgacaaaagcatatatgcatggttataattgttgaatta |
33104101 |
T |
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| Q |
162 |
tattagtcccaatttatttttaatgcttatttgattgtataaataattaattaagagtatctagtttagtcttagatttcttctaatacttaaccccaaa |
261 |
Q |
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| T |
33104100 |
tattagtcccaatttatttttaatgcttatttgattgtataaataattaattaagagtatctagtttagtcttagatttcttctaatacttaaccccaaa |
33104001 |
T |
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| Q |
262 |
atgttcatccttacaactttt |
282 |
Q |
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| T |
33104000 |
atgttcatccttacaactttt |
33103980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 38
Target Start/End: Complemental strand, 33104257 - 33104224
Alignment:
| Q |
5 |
gctacattattctttaggatttcaggcaattagc |
38 |
Q |
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| T |
33104257 |
gctacattattatttaggatttcaggcaattagc |
33104224 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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