View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7831_low_12 (Length: 349)
Name: NF7831_low_12
Description: NF7831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7831_low_12 |
 |  |
|
| [»] scaffold0097 (1 HSPs) |
 |  |  |
|
| [»] scaffold0915 (1 HSPs) |
 |  |  |
|
| [»] scaffold0272 (2 HSPs) |
 |  |  |
|
Alignment Details
Target: scaffold0097 (Bit Score: 181; Significance: 9e-98; HSPs: 1)
Name: scaffold0097
Description:
Target: scaffold0097; HSP #1
Raw Score: 181; E-Value: 9e-98
Query Start/End: Original strand, 18 - 334
Target Start/End: Complemental strand, 45216 - 44894
Alignment:
| Q |
18 |
atacaaacctgtcaagtgcagactatttttaaaaacaaataactttcggtaaaacatgctaaagcttagaagacataacagtaacaa------caatatg |
111 |
Q |
| |
|
|||||||| |||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||| || |
|
|
| T |
45216 |
atacaaacttgtcaagtgcagactatttttataaacaaataactttcgctaaaacatgctaaagcttagaagacataacagtaacagtaacagcaatctg |
45117 |
T |
 |
| Q |
112 |
taatatatactttaattttcatgttgtattggtatacagcggtagttaacaacatattannnnnnnnnnnnnnnnnatgttgtgttggtatacagcggta |
211 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||| || ||| |||||||||||||||||||| |
|
|
| T |
45116 |
taatatatactttaattttcatgttgtgttggtatacagcggtagttaacaacatactattttttaatttttttttatgctgtgttggtatacagcggta |
45017 |
T |
 |
| Q |
212 |
gttaattacagacggataaatctagcggtagttaattaccgttggaggcaaaaacgtcatttatctgtgtctttataaagttttgtatgtcagaaaagca |
311 |
Q |
| |
|
||||| ||| | | ||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| |
|
|
| T |
45016 |
gttaactaccggcagataaatctagcggtagttaactaccgttggaggcaaaaacgtcatttacctgtgtctttataaagttttgtatgccagaaaagca |
44917 |
T |
 |
| Q |
312 |
attttcgagttgatatatataga |
334 |
Q |
| |
|
|||||||| ||||||||||||| |
|
|
| T |
44916 |
attttcgaagtgatatatataga |
44894 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 89; Significance: 7e-43; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 18 - 134
Target Start/End: Original strand, 46413930 - 46414046
Alignment:
| Q |
18 |
atacaaacctgtcaagtgcagactatttttaaaaacaaataactttcggtaaaacatgctaaagcttagaagacataacagtaacaacaatatgtaatat |
117 |
Q |
| |
|
|||||||||||||||| ||||||||||||| |||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||| | |||||| |
|
|
| T |
46413930 |
atacaaacctgtcaagcgcagactatttttctaaacaaataactttcgctaaaacatgctaaagcgtagaagacataacagtaacaacaatctataatat |
46414029 |
T |
 |
| Q |
118 |
atactttaattttcatg |
134 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
46414030 |
atactttaattttcatg |
46414046 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 192 - 317
Target Start/End: Original strand, 46414100 - 46414225
Alignment:
| Q |
192 |
tgtgttggtatacagcggtagttaattacagacggataaatctagcggtagttaattaccgttggaggcaaaaacgtcatttatctgtgtctttataaag |
291 |
Q |
| |
|
|||||||||||||| |||||||||| ||| ||||||||||||||||||||||||| | |||||| ||||||||||||||||| | | | ||||| ||| |
|
|
| T |
46414100 |
tgtgttggtatacaacggtagttaactaccgacggataaatctagcggtagttaactgccgttgagggcaaaaacgtcatttacttatatttttatgaag |
46414199 |
T |
 |
| Q |
292 |
ttttgtatgtcagaaaagcaattttc |
317 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
46414200 |
ttttgtatgtcagaaaagcaattttc |
46414225 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 192 - 301
Target Start/End: Complemental strand, 46413158 - 46413049
Alignment:
| Q |
192 |
tgtgttggtatacagcggtagttaattacagacggataaatctagcggtagttaattaccgttggaggcaaaaacgtcatttatctgtgtctttataaag |
291 |
Q |
| |
|
|||||| ||||||| |||||||||| || ||||||||||||||||||||||||| |||||||| ||||| ||||||||||| | ||||||| | ||| |
|
|
| T |
46413158 |
tgtgttagtatacatcggtagttaaccaccgacggataaatctagcggtagttaactaccgttgtgggcaagaacgtcatttacttatgtctttttgaag |
46413059 |
T |
 |
| Q |
292 |
ttttgtatgt |
301 |
Q |
| |
|
|||||||||| |
|
|
| T |
46413058 |
ttttgtatgt |
46413049 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 235 - 317
Target Start/End: Complemental strand, 45471486 - 45471404
Alignment:
| Q |
235 |
agcggtagttaattaccgttggaggcaaaaacgtcatttatctgtgtctttataaagttttgtatgtcagaaaagcaattttc |
317 |
Q |
| |
|
|||||||||||| ||||| ||| |||| |||||| |||| | ||||||||| ||||||| ||||||| ||||||||||||| |
|
|
| T |
45471486 |
agcggtagttaactaccgctgggggcataaacgtattttacttatgtctttatgaagttttctatgtcaaaaaagcaattttc |
45471404 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0915 (Bit Score: 57; Significance: 9e-24; HSPs: 1)
Name: scaffold0915
Description:
Target: scaffold0915; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 192 - 312
Target Start/End: Complemental strand, 344 - 224
Alignment:
| Q |
192 |
tgtgttggtatacagcggtagttaattacagacggataaatctagcggtagttaattaccgttggaggcaaaaacgtcatttatctgtgtctttataaag |
291 |
Q |
| |
|
||||||||||||||||||||||||| ||| | ||||| ||| ||||| |||||| ||||||||| ||||||||| ||||||| ||||| |||| ||| |
|
|
| T |
344 |
tgtgttggtatacagcggtagttaactaccgccggatctatccagcggcagttaactaccgttgggggcaaaaacatcatttacatgtgtttttaggaag |
245 |
T |
 |
| Q |
292 |
ttttgtatgtcagaaaagcaa |
312 |
Q |
| |
|
|||| |||||||||||||||| |
|
|
| T |
244 |
ttttatatgtcagaaaagcaa |
224 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 57; Significance: 9e-24; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 192 - 312
Target Start/End: Complemental strand, 28984838 - 28984718
Alignment:
| Q |
192 |
tgtgttggtatacagcggtagttaattacagacggataaatctagcggtagttaattaccgttggaggcaaaaacgtcatttatctgtgtctttataaag |
291 |
Q |
| |
|
||||||||||||||||||||||||| ||| | ||||| ||| ||||| |||||| ||||||||| ||||||||| ||||||| ||||| |||| ||| |
|
|
| T |
28984838 |
tgtgttggtatacagcggtagttaactaccgccggatctatccagcggcagttaactaccgttgggggcaaaaacatcatttacatgtgtttttaggaag |
28984739 |
T |
 |
| Q |
292 |
ttttgtatgtcagaaaagcaa |
312 |
Q |
| |
|
|||| |||||||||||||||| |
|
|
| T |
28984738 |
ttttatatgtcagaaaagcaa |
28984718 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 45 - 103
Target Start/End: Complemental strand, 43992744 - 43992686
Alignment:
| Q |
45 |
tttaaaaacaaataactttcggtaaaacatgctaaagcttagaagacataacagtaaca |
103 |
Q |
| |
|
|||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43992744 |
tttataaacaaataactttcgctaaaacatgctaaagcttagaagacataacagtaaca |
43992686 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 81
Target Start/End: Complemental strand, 43992810 - 43992745
Alignment:
| Q |
18 |
atacaaacctgtcaagtgca--gactatttttaaaaacaaataactttcggtaaaacatgctaaag |
81 |
Q |
| |
|
||||| |||||||||||||| ||||||||||| |||||||||||||||| ||||||||||||||| |
|
|
| T |
43992810 |
atacacacctgtcaagtgcacagactatttttataaacaaataactttcgctaaaacatgctaaag |
43992745 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 192 - 317
Target Start/End: Complemental strand, 47110210 - 47110086
Alignment:
| Q |
192 |
tgtgttggtatacagcggtagttaattacagacggataaatctagcggtagttaattaccgttggaggcaaaaacgtcatttatctgtgtctttataaag |
291 |
Q |
| |
|
||||||| |||| |||||||||||| ||| | ||||||||| |||||||||||| | ||| || ||||||||||||||||| || |||||| || ||| |
|
|
| T |
47110210 |
tgtgttgatataaagcggtagttaactaccgccggataaattgagcggtagttaactgccgctgagggcaaaaacgtcattta-ct-tgtcttcattaag |
47110113 |
T |
 |
| Q |
292 |
-ttttgtatgtcagaaaagcaattttc |
317 |
Q |
| |
|
||||||||||||||||| ||| |||| |
|
|
| T |
47110112 |
attttgtatgtcagaaaaacaaatttc |
47110086 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 207 - 317
Target Start/End: Original strand, 4997117 - 4997227
Alignment:
| Q |
207 |
cggtagttaattacagacggataaatctagcggtagttaattaccgttggaggcaaaaacgtcatttatctgtgtctttataaagttttgtatgtcagaa |
306 |
Q |
| |
|
|||||||||| ||| | || |||||| | ||| |||||| ||||| ||||| ||||||||||||| |||||| ||| |||||||| |||||| || |
|
|
| T |
4997117 |
cggtagttaactactgcagggtaaatccaacggcagttaactaccgccggaggtaaaaacgtcatttccatgtgtcaatatgaagttttgaatgtcaaaa |
4997216 |
T |
 |
| Q |
307 |
aagcaattttc |
317 |
Q |
| |
|
||||||||||| |
|
|
| T |
4997217 |
aagcaattttc |
4997227 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 190 - 308
Target Start/End: Original strand, 33223148 - 33223266
Alignment:
| Q |
190 |
gttgtgttggtatacagcggtagttaattacagacggataaatctagcggtagttaattaccgttggaggcaaaaacgtcatttatctgtgtctttataa |
289 |
Q |
| |
|
||||||||||| |||||| |||| ||| ||| | ||||| |||| | |||||||||| |||||| ||||| |||| ||||||| | |||||| ||| | |
|
|
| T |
33223148 |
gttgtgttggtgtacagcagtagctaactaccgccggatcaatccaacggtagttaactaccgtcggaggttaaaatgtcatttctatgtgtcaatatga |
33223247 |
T |
 |
| Q |
290 |
agttttgtatgtcagaaaa |
308 |
Q |
| |
|
|||||| |||||| |||| |
|
|
| T |
33223248 |
cgttttgaatgtcaaaaaa |
33223266 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0272 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 2)
Name: scaffold0272
Description:
Target: scaffold0272; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 207 - 312
Target Start/End: Complemental strand, 8999 - 8895
Alignment:
| Q |
207 |
cggtagttaattacagacggataaatctagcggtagttaattaccgttggaggcaaaaacgtcatttatctgtgtctttataaagttttgtatgtcagaa |
306 |
Q |
| |
|
|||||||||| || | |||||||||| |||||||||||| |||||||||| | ||||||||||||| | | |||| |||| ||||||||||||| | || |
|
|
| T |
8999 |
cggtagttaacaaccgccggataaatccagcggtagttaactaccgttgga-gtaaaaacgtcatttctatatgtcattatgaagttttgtatgttaaaa |
8901 |
T |
 |
| Q |
307 |
aagcaa |
312 |
Q |
| |
|
|||||| |
|
|
| T |
8900 |
aagcaa |
8895 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0272; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 242 - 316
Target Start/End: Original strand, 9514 - 9588
Alignment:
| Q |
242 |
gttaattaccgttggaggcaaaaacgtcatttatctgtgtctttataaagttttgtatgtcagaaaagcaatttt |
316 |
Q |
| |
|
||||||||||| ||||| ||||||||||||| |||||| ||||||| |||| ||||||| |||||||||||| |
|
|
| T |
9514 |
gttaattaccgctggagataaaaacgtcattttcatgtgtcattataaaattttctatgtcaaaaaagcaatttt |
9588 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 231 - 317
Target Start/End: Original strand, 2286020 - 2286106
Alignment:
| Q |
231 |
atctagcggtagttaattaccgttggaggcaaaaacgtcatttatctgtgtctttataaagttttgtatgtcagaaaagcaattttc |
317 |
Q |
| |
|
|||||||||||||||| |||||||| |||| |||| | |||| |||||||||||| || |||| ||||||| ||||||||||||| |
|
|
| T |
2286020 |
atctagcggtagttaacgaccgttgggggcataaacatattttacctgtgtctttatgaacttttctatgtcaaaaaagcaattttc |
2286106 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 192 - 312
Target Start/End: Complemental strand, 5919294 - 5919177
Alignment:
| Q |
192 |
tgtgttggtatacagcggtagttaattacagacggataaatctagcggtagttaattaccgttggaggcaaaaacgtcatttatctgtgtctttataaag |
291 |
Q |
| |
|
||||||||||||||||||||||||| ||| | ||||| ||| |||||||||||| || | | ||||||||||||||||| ||||| |||| ||| |
|
|
| T |
5919294 |
tgtgttggtatacagcggtagttaactacggccggatcaattcagcggtagttaactatcat---gggcaaaaacgtcatttaattgtgtttttaggaag |
5919198 |
T |
 |
| Q |
292 |
ttttgtatgtcagaaaagcaa |
312 |
Q |
| |
|
|||| ||| ||||||||||| |
|
|
| T |
5919197 |
ttttatataccagaaaagcaa |
5919177 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 277 - 317
Target Start/End: Original strand, 12515340 - 12515380
Alignment:
| Q |
277 |
tgtgtctttataaagttttgtatgtcagaaaagcaattttc |
317 |
Q |
| |
|
||||||||||| ||||||| ||||||| ||||||||||||| |
|
|
| T |
12515340 |
tgtgtctttatgaagttttctatgtcaaaaaagcaattttc |
12515380 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 240 - 317
Target Start/End: Original strand, 33296840 - 33296917
Alignment:
| Q |
240 |
tagttaattaccgttggaggcaaaaacgtcatttatctgtgtctttataaagttttgtatgtcagaaaagcaattttc |
317 |
Q |
| |
|
||||||| |||||||| || |||||| ||||||||| | ||| |||| |||||| |||||| ||||||||||||||| |
|
|
| T |
33296840 |
tagttaactaccgttgaagacaaaaatgtcatttatttatgttattatgaagtttggtatgttagaaaagcaattttc |
33296917 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 192 - 317
Target Start/End: Complemental strand, 19802657 - 19802532
Alignment:
| Q |
192 |
tgtgttggtatacagcggtagttaattacagacggataaatctagcggtagttaattaccgttggaggcaaaaacgtcatttatctgtgtctttataaag |
291 |
Q |
| |
|
||||||||| ||||||||||||||| | | | ||||| |||| | |||||||||| ||||| ||||| |||||| |||||| |||||| ||| | | |
|
|
| T |
19802657 |
tgtgttggtgtacagcggtagttaactgccgccggatcaatccaacggtagttaactaccgccggaggtaaaaacatcattttcatgtgtcaatatgatg |
19802558 |
T |
 |
| Q |
292 |
ttttgtatgtcagaaaagcaattttc |
317 |
Q |
| |
|
||||| |||||| ||||| ||||||| |
|
|
| T |
19802557 |
ttttgaatgtcaaaaaagtaattttc |
19802532 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 190 - 314
Target Start/End: Complemental strand, 13112387 - 13112263
Alignment:
| Q |
190 |
gttgtgttggtatacagcggtagttaattacagacggataaatctagcggtagttaattaccgttggaggcaaaaacgtcatttatctgtgtctttataa |
289 |
Q |
| |
|
|||| |||||| | |||||||||||| ||| | || || |||| | |||||||||||||| | ||| |||||||| ||||||| ||||| |||| | |
|
|
| T |
13112387 |
gttgcgttggtttgcagcggtagttagctactgtcgtatcaatccaacggtagttaattactgatgggggcaaaaatgtcatttccatgtgttattatga |
13112288 |
T |
 |
| Q |
290 |
agttttgtatgtcagaaaagcaatt |
314 |
Q |
| |
|
|||||| |||| ||||||||||||| |
|
|
| T |
13112287 |
agttttatatggcagaaaagcaatt |
13112263 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 190 - 246
Target Start/End: Original strand, 13113085 - 13113141
Alignment:
| Q |
190 |
gttgtgttggtatacagcggtagttaattacagacggataaatctagcggtagttaa |
246 |
Q |
| |
|
||||||||||| ||||||||||||||| ||| | ||||| |||| |||||||||||| |
|
|
| T |
13113085 |
gttgtgttggtgtacagcggtagttaactaccgccggatcaatccagcggtagttaa |
13113141 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 261 - 317
Target Start/End: Original strand, 53896783 - 53896839
Alignment:
| Q |
261 |
aaaaacgtcatttatctgtgtctttataaagttttgtatgtcagaaaagcaattttc |
317 |
Q |
| |
|
||||||||||||| |||||| |||| ||| ||||||||||||||||||||||||| |
|
|
| T |
53896783 |
aaaaacgtcatttccatgtgtcattatgaagctttgtatgtcagaaaagcaattttc |
53896839 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 237 - 317
Target Start/End: Complemental strand, 53687781 - 53687701
Alignment:
| Q |
237 |
cggtagttaattaccgttggaggcaaaaacgtcatttatctgtgtctttataaagttttgtatgtcagaaaagcaattttc |
317 |
Q |
| |
|
|||||||||| ||||| ||||| ||||| ||||||| | |||||| ||| | |||||| |||||||||||| ||||||| |
|
|
| T |
53687781 |
cggtagttaactaccgctggagataaaaatgtcatttttatgtgtcaatatgacgttttgaatgtcagaaaagtaattttc |
53687701 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 277 - 317
Target Start/End: Complemental strand, 34456975 - 34456935
Alignment:
| Q |
277 |
tgtgtctttataaagttttgtatgtcagaaaagcaattttc |
317 |
Q |
| |
|
||||||||||||||||||| ||||||| ||||||||||||| |
|
|
| T |
34456975 |
tgtgtctttataaagttttttatgtcaaaaaagcaattttc |
34456935 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 268 - 317
Target Start/End: Complemental strand, 27808605 - 27808556
Alignment:
| Q |
268 |
tcatttatctgtgtctttataaagttttgtatgtcagaaaagcaattttc |
317 |
Q |
| |
|
|||||||| |||||| || | || |||||||||||||||||||||||||| |
|
|
| T |
27808605 |
tcatttatttgtgtcattgtgaacttttgtatgtcagaaaagcaattttc |
27808556 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 237 - 317
Target Start/End: Complemental strand, 43294276 - 43294196
Alignment:
| Q |
237 |
cggtagttaattaccgttggaggcaaaaacgtcatttatctgtgtctttataaagttttgtatgtcagaaaagcaattttc |
317 |
Q |
| |
|
|||||||||| ||||| | |||||| ||||| |||| ||||||||||| ||||||| ||||||| |||| |||||||| |
|
|
| T |
43294276 |
cggtagttaactaccgctagaggcattaacgtattttacttgtgtctttatgaagttttctatgtcaaaaaaacaattttc |
43294196 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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