View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7831_low_13 (Length: 317)
Name: NF7831_low_13
Description: NF7831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7831_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 275; Significance: 1e-154; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 17 - 310
Target Start/End: Complemental strand, 4189312 - 4189016
Alignment:
| Q |
17 |
caatgtgaacttgtcctcttttttataatcaatattctctaataatttctcatacattttcaccaataaactctacatatatcgtggacaattttccatc |
116 |
Q |
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| T |
4189312 |
caatgtgaacttgtcctcttttttataatcaatattctctaataatttctcatacattttcaccaataaactctacatatatcgtggacaattttccatc |
4189213 |
T |
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| Q |
117 |
atattaacctatcatcaacattacacctaactctgacaaacattacatttataact---tctttataacactgaacacccaatactcgagacatgtcaat |
213 |
Q |
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| T |
4189212 |
atattaacctatcatcaacattacacctaactctgacaaacattacatttataacttcttctttataacactaaacacccaatactcgagacatgtcaat |
4189113 |
T |
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| Q |
214 |
actacatttaccaagaatgccatcacatgctttctccaatgaaataaacaaaaagtaaaagattaaaatcttctctaaacttccatagttcatctca |
310 |
Q |
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| T |
4189112 |
actacatttaccaagaatgccatcacatgctttctccaatgaaataaacaaaaagtaaaagattaaaatcttctctaaacttccatagttcttctca |
4189016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 103 - 252
Target Start/End: Complemental strand, 4182723 - 4182571
Alignment:
| Q |
103 |
gacaattttccatcatattaacctatc-atcaacattacacctaactctgacaaacattacatttataacttctt---tataacactgaacacccaatac |
198 |
Q |
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|||| |||||||||||||| |||||| |||||| | ||| |||||||||||||||| ||||| ||||||||| ||||||| | || ||||||| |
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| T |
4182723 |
gacagttttccatcatatttacctatagatcaacgccataccaaactctgacaaacattccattt-taacttcttccttataacatcaaccatccaatac |
4182625 |
T |
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| Q |
199 |
tcgagacatgtcaatactacatttaccaagaatgccatcacatgctttctccaa |
252 |
Q |
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| T |
4182624 |
tcgagacatatctacactatgtttactaacactgccatcacatggtttctccaa |
4182571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 19 - 85
Target Start/End: Complemental strand, 4182816 - 4182750
Alignment:
| Q |
19 |
atgtgaacttg-tcctcttttttataatcaatattctctaataatttctcatacattttcaccaataa |
85 |
Q |
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||||||||||| |||||||||| ||| |||||||||||||||||||||| | ||||||| | |||||| |
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| T |
4182816 |
atgtgaacttggtcctctttttaata-tcaatattctctaataatttctaaaacatttttagcaataa |
4182750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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