View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7831_low_15 (Length: 298)
Name: NF7831_low_15
Description: NF7831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7831_low_15 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 168; Significance: 5e-90; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 53 - 286
Target Start/End: Original strand, 19754736 - 19754969
Alignment:
| Q |
53 |
aaattattacctttacattnnnnnnnncgatcaatgatatctgaatcaccaaccttcctaactttatacgaaccattcaaatttggatttgaagaggttt |
152 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
19754736 |
aaattattacctttacattaaaaaaaacgatcaatgatatctgaatcaccaaccttcctaactttatacgaaccatccaaatttggatttgaagaggttt |
19754835 |
T |
|
| Q |
153 |
ctttctacaccaaaaacaacaaattcatcccagacaatagctgaaactcatgaggaaaagtctcatgattgtttccctaaatttttcaaacaattattac |
252 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| |
|
|
| T |
19754836 |
ctttctacaccaaaaacaacaaattcatcccagacaatagctgaaactcatgaggaaaagtctcatggttgtttccctaaatttttcaaacaattaatac |
19754935 |
T |
|
| Q |
253 |
annnnnnnnnngaataaaacaaccaacaattatt |
286 |
Q |
| |
|
| ||||||||||||||||||||||| |
|
|
| T |
19754936 |
attttttttttgaataaaacaaccaacaattatt |
19754969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 19754643 - 19754713
Alignment:
| Q |
1 |
ctctcaccaacaatcatcaaatgaagaaatttggatatcaattaannnnnnnaaattattacctttacatt |
71 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
19754643 |
ctctcaccaacaatcatcaaatgaagaaatttggatatcaattaatttttttaaattattacctttacatt |
19754713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University