View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7831_low_16 (Length: 297)
Name: NF7831_low_16
Description: NF7831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7831_low_16 |
 | |
|
| [»] chr2 (1 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 38 - 297
Target Start/End: Original strand, 37802006 - 37802265
Alignment:
| Q |
38 |
tccttcctatatttctctctaatacacctcatcctcacacccttctttccacgtgctctttattatgagatgactttcctctattcatatcataacaatt |
137 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37802006 |
tccttcctatatttctctctaatacacctcatcctcacacccttctttccacgtgctctttattatgagatgactttcctctattcatatcataacaatt |
37802105 |
T |
|
| Q |
138 |
taatggttccaaatattacctgaggattagtctcatagatatagaattgagtaagcaagttgttaaactctaaaatattttcctataatcaagcaataaa |
237 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37802106 |
taatgcttccaaatattacctgaggattagtctcatagatatagaattgagtaagcaagttgttaaactctaaaatattttcctataatcaagcaataaa |
37802205 |
T |
|
| Q |
238 |
tttatcaaatagaatttggaaagacttgtccataaatcttagtttaaatggtaaaacacg |
297 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
37802206 |
tttatcaaatagaatttggaaagacttgtccacaaatcttagtttaaatggtaaaacacg |
37802265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University