View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7831_low_17 (Length: 279)
Name: NF7831_low_17
Description: NF7831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7831_low_17 |
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Alignment Details
Target: chr7 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 4 - 263
Target Start/End: Original strand, 39932540 - 39932799
Alignment:
| Q |
4 |
agaaaatattttcaaatcaagacacatttatcttaattgttgcatttctcgagtgaagacaagttccttaacaggggcaacaagagactcgacataatac |
103 |
Q |
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| T |
39932540 |
agaaaatattttcaaatcaagacacatttatcttaattgttgcatttctcgagtgaagacaagttccttaacaggggcaacaagagactcgacataatac |
39932639 |
T |
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| Q |
104 |
ctacaacttctctcaattctaccatgtccccatgaataggactccgcccataacacaatcgacatatccaagacatattcctacaggtaaagggagttca |
203 |
Q |
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| T |
39932640 |
ctacaacttctctcaattctaccatgtccccatgaataggactccgcccgtaacacgatcgacatatccaagacgtattcctacaggtaaagggagttcg |
39932739 |
T |
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| Q |
204 |
aataaacatgtgtttgaaaagttatgaatcgattgataagtccaattcgaataccttgat |
263 |
Q |
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| T |
39932740 |
aataaatatgtgtttgaaaagttatgaatcgattgataagtccaattccaataccttgat |
39932799 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 108; Significance: 3e-54; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 97 - 263
Target Start/End: Original strand, 18148679 - 18148850
Alignment:
| Q |
97 |
ataatacctacaacttctctcaattctaccatgtccccatgaataggactccgcccataacacaatcgacatatccaagacatattcctacaggtaaagg |
196 |
Q |
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| T |
18148679 |
ataatacctacagcttctcccaattctaccaggtccccatgaataggactccgcccataacacaatcggcagatccaagacgtattcctacaggtaaagg |
18148778 |
T |
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| Q |
197 |
gagttcaaataaaca-----tgtgtttgaaaagttatgaatcgattgataagtccaattcgaataccttgat |
263 |
Q |
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| T |
18148779 |
gggttcgaataaatattggttgtgtttgaaaagttatgaatcgattgataagtccaattccaatatcttgat |
18148850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 118 - 164
Target Start/End: Complemental strand, 49069112 - 49069066
Alignment:
| Q |
118 |
aattctaccatgtccccatgaataggactccgcccataacacaatcg |
164 |
Q |
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| T |
49069112 |
aattctaccaggtccccatgaataggactccgcccataacataatcg |
49069066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 263
Target Start/End: Complemental strand, 34210368 - 34210331
Alignment:
| Q |
226 |
tatgaatcgattgataagtccaattcgaataccttgat |
263 |
Q |
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| T |
34210368 |
tatgaatcgattgataagtccaattccaatatcttgat |
34210331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 212 - 263
Target Start/End: Complemental strand, 12952873 - 12952822
Alignment:
| Q |
212 |
tgtgtttgaaaagttatgaatcgattgataagtccaattcgaataccttgat |
263 |
Q |
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| T |
12952873 |
tgtgtttgaaaagttatgaatcgattgataagtccaattccaatatcttgat |
12952822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 212 - 256
Target Start/End: Complemental strand, 2363420 - 2363376
Alignment:
| Q |
212 |
tgtgtttgaaaagttatgaatcgattgataagtccaattcgaata |
256 |
Q |
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| T |
2363420 |
tgtgtttgaaaagctatgaactgattgataagtccaattccaata |
2363376 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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