View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7831_low_18 (Length: 261)

Name: NF7831_low_18
Description: NF7831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7831_low_18
NF7831_low_18
[»] chr1 (1 HSPs)
chr1 (18-204)||(45782980-45783166)
[»] chr5 (5 HSPs)
chr5 (150-250)||(37592218-37592317)
chr5 (150-250)||(37709506-37709605)
chr5 (150-231)||(37694577-37694658)
chr5 (150-250)||(37821619-37821718)
chr5 (150-250)||(37531011-37531110)


Alignment Details
Target: chr1 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 18 - 204
Target Start/End: Complemental strand, 45783166 - 45782980
Alignment:
Q  18 tgttctacttatcatttatttactacttagtatgatcctactaattgaccaaaaccaaatatgaaattacctctgtgatctattaggataccttcacaca 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||    
T  45783166 tgttctacttatcatttatttactacttagtatgatcctactaattgaccaaaaccaaatatgaaattacctctgtgatctattaggataccaccacaca 45783067  T
Q  118 agaagcattgacagagggtactataattgaaccatcacagcttaaagcaacaatatgttttacccatattttcaaatgaatgtgtat 204  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45783066 agaagcattgacagagggtactataattgaaccatcacagcttaaagcaacaatatgttttacccatattttcaaatgaatgtgtat 45782980  T

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Target: chr5 (Bit Score: 73; Significance: 2e-33; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 150 - 250
Target Start/End: Original strand, 37592218 - 37592317
Alignment:
Q  150 catcacagcttaaagcaacaatatgttttacccatattttcaaatgaatgtgtatgtatttacgcatgttttaatgaatatttgttcgatcattcattca 249  Q
    ||||||||||||||||||||||| ||||||| |||||||||| ||||||||||||||||||||||||||||||||||||| |||||| || |||||||||    
T  37592218 catcacagcttaaagcaacaatacgttttactcatattttcatatgaatgtgtatgtatttacgcatgttttaatgaata-ttgttcaattattcattca 37592316  T

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Target: chr5; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 150 - 250
Target Start/End: Original strand, 37709506 - 37709605
Alignment:
Q  150 catcacagcttaaagcaacaatatgttttacccatattttcaaatgaatgtgtatgtatttacgcatgttttaatgaatatttgttcgatcattcattca 249  Q
    ||||||||||||||||||||||| ||||||| |||||||||| ||||||||||||||||||||||||||||||||||||| |||||| || |||||||||    
T  37709506 catcacagcttaaagcaacaatacgttttactcatattttcatatgaatgtgtatgtatttacgcatgttttaatgaata-ttgttcaattattcattca 37709604  T

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Target: chr5; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 150 - 231
Target Start/End: Original strand, 37694577 - 37694658
Alignment:
Q  150 catcacagcttaaagcaacaatatgttttacccatattttcaaatgaatgtgtatgtatttacgcatgttttaatgaatatt 231  Q
    ||||||||||||||||||||||| ||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||    
T  37694577 catcacagcttaaagcaacaatacgttttactcatattttcatatgaatgtgtatgtatttacgcatgttttaatgaatatt 37694658  T

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Target: chr5; HSP #4
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 150 - 250
Target Start/End: Original strand, 37821619 - 37821718
Alignment:
Q  150 catcacagcttaaagcaacaatatgttttacccatattttcaaatgaatgtgtatgtatttacgcatgttttaatgaatatttgttcgatcattcattca 249  Q
    |||||||||||||||||||||||  |||||| |||||||||| ||||||||||||||||||||||||||||||||||||| |||||| || |||||||||    
T  37821619 catcacagcttaaagcaacaatacattttactcatattttcatatgaatgtgtatgtatttacgcatgttttaatgaata-ttgttcaattattcattca 37821717  T

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Target: chr5; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 150 - 250
Target Start/End: Original strand, 37531011 - 37531110
Alignment:
Q  150 catcacagcttaaagcaacaatatgttttacccatattttcaaatgaatgtgtatgtatttacgcatgttttaatgaatatttgttcgatcattcattca 249  Q
    ||||||||||||||||||||||| ||||||| |||| ||||| ||||||||||||||||||||||||||||||||| ||| |||||| || |||||||||    
T  37531011 catcacagcttaaagcaacaatacgttttactcataatttcatatgaatgtgtatgtatttacgcatgttttaatggata-ttgttcaattattcattca 37531109  T

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