View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7831_low_20 (Length: 249)
Name: NF7831_low_20
Description: NF7831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7831_low_20 |
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Alignment Details
Target: chr2 (Bit Score: 226; Significance: 1e-125; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 11850127 - 11850364
Alignment:
| Q |
1 |
aatttcaattgaagctactcaccttaccacagtagttcaaggtacttttggttacttagaccccgagtactttcatacaagtcaatttactgagaaaagt |
100 |
Q |
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| T |
11850127 |
aatttcaattgaagctactcaccttaccacagtagttcaaggtacttttggttacttagaccctgagtactttcatacaagtcaatttactgagaaaagt |
11850226 |
T |
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| Q |
101 |
gatgtgtacagctttggagttgttcttgctgaacttttaactggtaagaagccaatatctgcaataggatctggggaataccaaaatttagcttcctatt |
200 |
Q |
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| T |
11850227 |
gatgtgtacagcttcggagttgttcttgctgaacttttaacgggtaagaagccaatatctgcaataggatctggggaataccaaaatttagcttcctatt |
11850326 |
T |
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| Q |
201 |
ttattcagtgtatagaggaggatatgttgtttgatatt |
238 |
Q |
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| T |
11850327 |
ttattcagtgtatagaggaggatatgttgtttgatatt |
11850364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 5 - 234
Target Start/End: Original strand, 11845402 - 11845631
Alignment:
| Q |
5 |
tcaattgaagctactcaccttaccacagtagttcaaggtacttttggttacttagaccccgagtactttcatacaagtcaatttactgagaaaagtgatg |
104 |
Q |
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| T |
11845402 |
tcaattgaagctactcaccttaccacggtagttcaaggtacttttggttacttagaccctgagtactttcatacaagtcaatttaccgagaaaagtgatg |
11845501 |
T |
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| Q |
105 |
tgtacagctttggagttgttcttgctgaacttttaactggtaagaagccaatatctgcaataggatctggggaataccaaaatttagcttcctattttat |
204 |
Q |
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| T |
11845502 |
tatttagcttcggagtagttcttgctgaacttttaaccggtaagaagccggtatcctctataggatctggcgaataccaaagtttagcttcctattttat |
11845601 |
T |
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| Q |
205 |
tcagtgtatagaggaggatatgttgtttga |
234 |
Q |
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| T |
11845602 |
tgagtgtatagatgagaatatgttgtttga |
11845631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.00000000009; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 38 - 128
Target Start/End: Original strand, 1843158 - 1843248
Alignment:
| Q |
38 |
caaggtacttttggttacttagaccccgagtactttcatacaagtcaatttactgagaaaagtgatgtgtacagctttggagttgttcttg |
128 |
Q |
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| T |
1843158 |
caaggaactattggctacttagatccagagtatatgcaaacaagtcaattaactgaaaaaagtgatgtctatagctttggagtagttcttg |
1843248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 38 - 128
Target Start/End: Original strand, 1857169 - 1857259
Alignment:
| Q |
38 |
caaggtacttttggttacttagaccccgagtactttcatacaagtcaatttactgagaaaagtgatgtgtacagctttggagttgttcttg |
128 |
Q |
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| T |
1857169 |
caaggaactattggctacttagatccagagtatatgcaaacaagtcaattaactgaaaaaagtgatgtctatagctttggagtagttcttg |
1857259 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 38 - 128
Target Start/End: Original strand, 1868767 - 1868857
Alignment:
| Q |
38 |
caaggtacttttggttacttagaccccgagtactttcatacaagtcaatttactgagaaaagtgatgtgtacagctttggagttgttcttg |
128 |
Q |
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| T |
1868767 |
caaggaactattggctacttagatccagagtatatgcaaacaagtcaattaactgaaaaaagtgatgtctatagctttggagtagttcttg |
1868857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 77 - 128
Target Start/End: Complemental strand, 1815836 - 1815785
Alignment:
| Q |
77 |
acaagtcaatttactgagaaaagtgatgtgtacagctttggagttgttcttg |
128 |
Q |
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| T |
1815836 |
acaagccaattaactgagaaaagtgatgtatatagctttggagtagttcttg |
1815785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 48 - 129
Target Start/End: Original strand, 9118765 - 9118846
Alignment:
| Q |
48 |
ttggttacttagaccccgagtactttcatacaagtcaatttactgagaaaagtgatgtgtacagctttggagttgttcttgc |
129 |
Q |
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| T |
9118765 |
ttggatacttagacccagagtacatgcaaacgcatcaattaaccgagaaaagtgatgtttatagctttggagtagttcttgc |
9118846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 127
Target Start/End: Complemental strand, 20550083 - 20550043
Alignment:
| Q |
87 |
ttactgagaaaagtgatgtgtacagctttggagttgttctt |
127 |
Q |
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| T |
20550083 |
ttactgagaaaagtgatgtatatagttttggagttgttctt |
20550043 |
T |
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