View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7831_low_21 (Length: 239)
Name: NF7831_low_21
Description: NF7831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7831_low_21 |
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Alignment Details
Target: chr4 (Bit Score: 159; Significance: 8e-85; HSPs: 10)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 18 - 188
Target Start/End: Complemental strand, 3749278 - 3749108
Alignment:
| Q |
18 |
tcaatgagtgaatctcttcaaataattagagtaagtaacacaaacttctatggagcattacctaacattattggaaacctgagaaagttatctactttgg |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
3749278 |
tcaatgagtgaatctcttcaaataattagagtaagtaacacaaacttctatggagcattacctaacattattggaaacctgagaaaattatctactttgg |
3749179 |
T |
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| Q |
118 |
atctttctttttgtcaattcaatggaacacttccaaattcattgtcaaacctcacacacctcagttacttg |
188 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| |
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| T |
3749178 |
atctttctttttgtcaattcaatggaacacttccaaattcattgtcaaacctcacacaactgagttacttg |
3749108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 24 - 221
Target Start/End: Complemental strand, 5565120 - 5564923
Alignment:
| Q |
24 |
agtgaatctcttcaaataattagagtaagtaacacaaacttctatggagcattacctaacattattggaaacctgagaaagttatctactttggatcttt |
123 |
Q |
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|||||||||||||| | |||| ||| ||| |||||||||||| |||||||||||||| | |||||| || |||| | ||||||| |||||||||| |
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| T |
5565120 |
agtgaatctcttcatagcattatagtgagttacacaaacttctctggagcattacctagctctattggcaaattgaggcacttatctaaattggatcttt |
5565021 |
T |
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| Q |
124 |
ctttttgtcaattcaatggaacacttccaaattcattgtcaaacctcacacacctcagttacttggatttgtcaaacaatagtttcacaggtccaatg |
221 |
Q |
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| T |
5565020 |
ccagttgtcaatttaatggaacacttccaaattcattgtcaaacctcacacacctcagttacttggatttgtcaaacaatagtttcacaggtccaatg |
5564923 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 24 - 197
Target Start/End: Complemental strand, 5858384 - 5858211
Alignment:
| Q |
24 |
agtgaatctcttcaaataattagagtaagtaacacaaacttctatggagcattacctaacattattggaaacctgagaaagttatctactttggatcttt |
123 |
Q |
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| T |
5858384 |
agtgaatctcttcatagaattagagtgagtgacacaaacttctctggaccattacctagctctattggcaacttgaggcagttatctgaattggatcttt |
5858285 |
T |
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| Q |
124 |
ctttttgtcaattcaatggaacacttccaaattcattgtcaaacctcacacacctcagttacttggatttgtca |
197 |
Q |
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||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
5858284 |
ctttttgtcaatttaatggaacccttccaaattcattgtcaaacctcacacacctcagttacttggatctgtca |
5858211 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 51 - 221
Target Start/End: Complemental strand, 5605410 - 5605240
Alignment:
| Q |
51 |
agtaacacaaacttctatggagcattacctaacattattggaaacctgagaaagttatctactttggatctttctttttgtcaattcaatggaacacttc |
150 |
Q |
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|||||||||| ||||| |||||||||||||| | |||||| ||| |||| | |||||| ||| ||||||| ||||||||| |||||||||||| |
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| T |
5605410 |
agtaacacaagcttctctggagcattacctagctctattggcaacttgaggcacttatctgaattgtatctttccagttgtcaatttaatggaacacttt |
5605311 |
T |
|
| Q |
151 |
caaattcattgtcaaacctcacacacctcagttacttggatttgtcaaacaatagtttcacaggtccaatg |
221 |
Q |
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| ||||||||||||||||||||||| ||||| |||||||||||||||| |||| |||||||||||||||| |
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| T |
5605310 |
ccaattcattgtcaaacctcacacaactcagggacttggatttgtcaaataataatttcacaggtccaatg |
5605240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 114 - 217
Target Start/End: Original strand, 5852983 - 5853086
Alignment:
| Q |
114 |
ttggatctttctttttgtcaattcaatggaacacttccaaattcattgtcaaacctcacacacctcagttacttggatttgtcaaacaatagtttcacag |
213 |
Q |
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|||||||||||| || |||||| |||||||||||||| |||||||| |||||||| ||| | || |||||||||||||||||| || |||||||||| |
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| T |
5852983 |
ttggatctttctaattctcaatttaatggaacacttcccaattcattttcaaacctaacagaactaagttacttggatttgtcatttaacagtttcacag |
5853082 |
T |
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| Q |
214 |
gtcc |
217 |
Q |
| |
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|||| |
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| T |
5853083 |
gtcc |
5853086 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 114 - 217
Target Start/End: Complemental strand, 5553441 - 5553338
Alignment:
| Q |
114 |
ttggatctttctttttgtcaattcaatggaacacttccaaattcattgtcaaacctcacacacctcagttacttggatttgtcaaacaatagtttcacag |
213 |
Q |
| |
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|||||||||||| || ||||| |||||||||||||| |||||||| |||||||| ||| | || |||||||||||||||||| || |||||||||| |
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| T |
5553441 |
ttggatctttctaattctcaatataatggaacacttcccaattcattttcaaacctaacagaactaagttacttggatttgtcatttaacagtttcacag |
5553342 |
T |
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| Q |
214 |
gtcc |
217 |
Q |
| |
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|||| |
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| T |
5553341 |
gtcc |
5553338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 24 - 178
Target Start/End: Original strand, 5886234 - 5886388
Alignment:
| Q |
24 |
agtgaatctcttcaaataattagagtaagtaacacaaacttctatggagcattacctaacattattggaaacctgagaaagttatctact-ttggatctt |
122 |
Q |
| |
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||||||| |||||| | |||||||| |||||||||| ||||| ||||||||| || |||| ||| || ||| ||| ||| ||| || || |||||| || |
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| T |
5886234 |
agtgaatatcttcatagcattagagtgagtaacacaagcttctctggagcatttccaaacaatatcggtaacatgacaaactta-ctcctattggatatt |
5886332 |
T |
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| Q |
123 |
tctttttgtcaattcaatggaacacttccaaattcattgtcaaacctcacacacct |
178 |
Q |
| |
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||||| |||||| | ||||||||||||| |||||| ||||||| ||||||||||| |
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| T |
5886333 |
tctttctgtcaactatatggaacacttcccaattcactgtcaaatctcacacacct |
5886388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 114 - 175
Target Start/End: Original strand, 5895169 - 5895230
Alignment:
| Q |
114 |
ttggatctttctttttgtcaattcaatggaacacttccaaattcattgtcaaacctcacaca |
175 |
Q |
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||||||||||||| |||||| | ||||||||||||| |||||| |||||||||||||||| |
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| T |
5895169 |
ttggatctttcttactgtcaactatatggaacacttcccaattcactgtcaaacctcacaca |
5895230 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 129 - 173
Target Start/End: Original strand, 252329 - 252373
Alignment:
| Q |
129 |
tgtcaattcaatggaacacttccaaattcattgtcaaacctcaca |
173 |
Q |
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|||||||| ||||| |||||||| ||||||||||||||||||||| |
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| T |
252329 |
tgtcaatttaatggtacacttcccaattcattgtcaaacctcaca |
252373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 114 - 221
Target Start/End: Original strand, 5583307 - 5583414
Alignment:
| Q |
114 |
ttggatctttctttttgtcaattcaatggaacacttccaaattcattgtcaaacctcacacacctcagttacttggatttgtcaaacaatagtttcacag |
213 |
Q |
| |
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||||||||||| |||| || | |||||||||||||| |||| |||||||||||||| | || || ||| ||||||||||| ||||||||||||| |
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| T |
5583307 |
ttggatctttcgaattgtgaacttaatggaacacttcccttttcactgtcaaacctcacaaaactgagatacatggatttgtcatctaatagtttcacag |
5583406 |
T |
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| Q |
214 |
gtccaatg |
221 |
Q |
| |
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||| |||| |
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| T |
5583407 |
gtcaaatg |
5583414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 114 - 178
Target Start/End: Complemental strand, 1483285 - 1483221
Alignment:
| Q |
114 |
ttggatctttctttttgtcaattcaatggaacacttccaaattcattgtcaaacctcacacacct |
178 |
Q |
| |
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||||||||| ||| |||||||| |||||||||||||| |||||| |||| |||||||||||||| |
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|
| T |
1483285 |
ttggatcttccttactgtcaatttaatggaacacttcccaattcaatgtccaacctcacacacct |
1483221 |
T |
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