View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7831_low_24 (Length: 202)

Name: NF7831_low_24
Description: NF7831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7831_low_24
NF7831_low_24
[»] scaffold0062 (10 HSPs)
scaffold0062 (16-185)||(4672-4842)
scaffold0062 (116-169)||(57927-57980)
scaffold0062 (116-169)||(70061-70114)
scaffold0062 (116-169)||(70926-70979)
scaffold0062 (116-179)||(40728-40791)
scaffold0062 (97-171)||(12334-12408)
scaffold0062 (116-169)||(3890-3943)
scaffold0062 (97-154)||(24628-24685)
scaffold0062 (97-154)||(34794-34851)
scaffold0062 (116-169)||(58815-58867)
[»] chr2 (4 HSPs)
chr2 (116-169)||(15709015-15709068)
chr2 (116-169)||(15721504-15721557)
chr2 (116-169)||(15722369-15722422)
chr2 (116-169)||(15709903-15709955)
[»] chr8 (2 HSPs)
chr8 (116-169)||(18688740-18688793)
chr8 (116-169)||(18689626-18689679)


Alignment Details
Target: scaffold0062 (Bit Score: 151; Significance: 4e-80; HSPs: 10)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 151; E-Value: 4e-80
Query Start/End: Original strand, 16 - 185
Target Start/End: Complemental strand, 4842 - 4672
Alignment:
Q  16 aagaaccagatagatttcaccc-gtaaaaaagttaatgttagagagagtatgagtattcctaacatttctgatgttattttgttatgatcatggattaga 114  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||    
T  4842 aagaaccagatagatttcaccccgtaaaaaagttaatgttagagagagtatgattattcctaacatttctcatgttattttgttatgatcatggattaga 4743  T
Q  115 cttatgttcacactatagttgttaggagagtttaaaatttgaatcatcattttttaagtaaaggcaaaaca 185  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  4742 cttatgttcacactatagttgttaggagagtttaaaatttgaatcatcattttttaagtaaagtcaaaaca 4672  T

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Target: scaffold0062; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 116 - 169
Target Start/End: Complemental strand, 57980 - 57927
Alignment:
Q  116 ttatgttcacactatagttgttaggagagtttaaaatttgaatcatcatttttt 169  Q
    ||||||||||||||| |||||||||||| ||||||||||||||||||| |||||    
T  57980 ttatgttcacactatggttgttaggagaatttaaaatttgaatcatcagttttt 57927  T

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Target: scaffold0062; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 116 - 169
Target Start/End: Complemental strand, 70114 - 70061
Alignment:
Q  116 ttatgttcacactatagttgttaggagagtttaaaatttgaatcatcatttttt 169  Q
    ||||||||||||||| |||||||||||| |||||| |||||||||||| |||||    
T  70114 ttatgttcacactatggttgttaggagaatttaaagtttgaatcatcagttttt 70061  T

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Target: scaffold0062; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 116 - 169
Target Start/End: Complemental strand, 70979 - 70926
Alignment:
Q  116 ttatgttcacactatagttgttaggagagtttaaaatttgaatcatcatttttt 169  Q
    ||||||||||||||| |||||||||||| |||||| |||||||||||| |||||    
T  70979 ttatgttcacactatggttgttaggagaatttaaagtttgaatcatcagttttt 70926  T

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Target: scaffold0062; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 116 - 179
Target Start/End: Complemental strand, 40791 - 40728
Alignment:
Q  116 ttatgttcacactatagttgttaggagagtttaaaatttgaatcatcattttttaagtaaaggc 179  Q
    |||||||| |||||| |||||||||||| ||||||||||| ||||||| |||||  ||||||||    
T  40791 ttatgttcgcactatggttgttaggagaatttaaaatttggatcatcaatttttgtgtaaaggc 40728  T

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Target: scaffold0062; HSP #6
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 97 - 171
Target Start/End: Original strand, 12334 - 12408
Alignment:
Q  97 ttatgatcatggattagacttatgttcacactatagttgttaggagagtttaaaatttgaatcatcattttttaa 171  Q
    |||||||||||||| ||| |||| |||||||||| ||||||| |||| || ||||||| | |||||| |||||||    
T  12334 ttatgatcatggatcagagttattttcacactatggttgttaagagaattaaaaatttcattcatcaatttttaa 12408  T

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Target: scaffold0062; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 116 - 169
Target Start/End: Complemental strand, 3943 - 3890
Alignment:
Q  116 ttatgttcacactatagttgttaggagagtttaaaatttgaatcatcatttttt 169  Q
    ||||||||||||||| ||||| || ||| ||||||||||| |||||||| ||||    
T  3943 ttatgttcacactatggttgtcagtagaatttaaaatttggatcatcatatttt 3890  T

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Target: scaffold0062; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 97 - 154
Target Start/End: Original strand, 24628 - 24685
Alignment:
Q  97 ttatgatcatggattagacttatgttcacactatagttgttaggagagtttaaaattt 154  Q
    |||||||||||||| ||| |||| |||||||||| ||||||| |||| || |||||||    
T  24628 ttatgatcatggatcagagttattttcacactatggttgttaagagaattaaaaattt 24685  T

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Target: scaffold0062; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 97 - 154
Target Start/End: Original strand, 34794 - 34851
Alignment:
Q  97 ttatgatcatggattagacttatgttcacactatagttgttaggagagtttaaaattt 154  Q
    |||||||||||||| ||| |||| |||||||||| ||||||| |||| || |||||||    
T  34794 ttatgatcatggatcagagttattttcacactatggttgttaagagaattaaaaattt 34851  T

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Target: scaffold0062; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 116 - 169
Target Start/End: Complemental strand, 58867 - 58815
Alignment:
Q  116 ttatgttcacactatagttgttaggagagtttaaaatttgaatcatcatttttt 169  Q
    ||||||||||||||| |||||||||||| ||| || |||||||||||| |||||    
T  58867 ttatgttcacactatggttgttaggagaattt-aagtttgaatcatcagttttt 58815  T

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Target: chr2 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 116 - 169
Target Start/End: Complemental strand, 15709068 - 15709015
Alignment:
Q  116 ttatgttcacactatagttgttaggagagtttaaaatttgaatcatcatttttt 169  Q
    ||||||||||||||| |||||||||||| ||||||||||||||||||| |||||    
T  15709068 ttatgttcacactatggttgttaggagaatttaaaatttgaatcatcagttttt 15709015  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 116 - 169
Target Start/End: Complemental strand, 15721557 - 15721504
Alignment:
Q  116 ttatgttcacactatagttgttaggagagtttaaaatttgaatcatcatttttt 169  Q
    ||||||||||||||| |||||||||||| |||||| |||||||||||| |||||    
T  15721557 ttatgttcacactatggttgttaggagaatttaaagtttgaatcatcagttttt 15721504  T

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Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 116 - 169
Target Start/End: Complemental strand, 15722422 - 15722369
Alignment:
Q  116 ttatgttcacactatagttgttaggagagtttaaaatttgaatcatcatttttt 169  Q
    ||||||||||||||| |||||||||||| |||||| |||||||||||| |||||    
T  15722422 ttatgttcacactatggttgttaggagaatttaaagtttgaatcatcagttttt 15722369  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 116 - 169
Target Start/End: Complemental strand, 15709955 - 15709903
Alignment:
Q  116 ttatgttcacactatagttgttaggagagtttaaaatttgaatcatcatttttt 169  Q
    ||||||||||||||| |||||||||||| ||| || |||||||||||| |||||    
T  15709955 ttatgttcacactatggttgttaggagaattt-aagtttgaatcatcagttttt 15709903  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 116 - 169
Target Start/End: Complemental strand, 18688793 - 18688740
Alignment:
Q  116 ttatgttcacactatagttgttaggagagtttaaaatttgaatcatcatttttt 169  Q
    ||||||||||||||| |||||||||||| |||||| |||||||||||| |||||    
T  18688793 ttatgttcacactatggttgttaggagaatttaaagtttgaatcatcagttttt 18688740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 116 - 169
Target Start/End: Complemental strand, 18689679 - 18689626
Alignment:
Q  116 ttatgttcacactatagttgttaggagagtttaaaatttgaatcatcatttttt 169  Q
    ||||||||||||||| |||||||||||| |||||| |||||||||||| |||||    
T  18689679 ttatgttcacactatggttgttaggagaatttaaagtttgaatcatcagttttt 18689626  T

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