View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7831_low_6 (Length: 493)

Name: NF7831_low_6
Description: NF7831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7831_low_6
NF7831_low_6
[»] chr1 (19 HSPs)
chr1 (123-483)||(1243510-1243871)
chr1 (15-196)||(45807207-45807387)
chr1 (10-77)||(1243447-1243514)
chr1 (9-196)||(17879636-17879822)
chr1 (338-388)||(37125687-37125737)
chr1 (276-323)||(45807071-45807118)
chr1 (396-428)||(20381135-20381167)
chr1 (389-428)||(9693933-9693972)
chr1 (394-428)||(4085670-4085704)
chr1 (338-384)||(6849751-6849797)
chr1 (338-384)||(17285407-17285453)
chr1 (398-428)||(32714175-32714205)
chr1 (338-379)||(8530086-8530127)
chr1 (338-379)||(16693062-16693103)
chr1 (278-323)||(17879914-17879959)
chr1 (338-379)||(33012170-33012211)
chr1 (342-379)||(48708535-48708572)
chr1 (400-428)||(25388988-25389016)
chr1 (400-428)||(50378209-50378237)
[»] chr6 (11 HSPs)
chr6 (18-207)||(18235089-18235282)
chr6 (15-196)||(2399087-2399271)
chr6 (15-205)||(2045045-2045233)
chr6 (276-323)||(2044929-2044976)
chr6 (389-428)||(15134923-15134962)
chr6 (278-321)||(2399359-2399402)
chr6 (277-323)||(18234972-18235018)
chr6 (389-428)||(521335-521374)
chr6 (398-428)||(22747127-22747157)
chr6 (398-428)||(32183946-32183976)
chr6 (400-428)||(15611649-15611677)
[»] chr8 (15 HSPs)
chr8 (10-207)||(26149219-26149416)
chr8 (46-196)||(36257426-36257576)
chr8 (389-428)||(37127550-37127589)
chr8 (389-428)||(40978834-40978873)
chr8 (396-428)||(1598027-1598059)
chr8 (396-428)||(20765770-20765802)
chr8 (338-388)||(1098052-1098102)
chr8 (338-384)||(9830606-9830652)
chr8 (146-196)||(33180495-33180545)
chr8 (394-428)||(43429490-43429524)
chr8 (123-196)||(11635952-11636025)
chr8 (338-379)||(34934370-34934411)
chr8 (402-455)||(38560193-38560248)
chr8 (396-428)||(40216524-40216556)
chr8 (396-428)||(42845331-42845363)
[»] chr4 (19 HSPs)
chr4 (9-205)||(32151242-32151438)
chr4 (15-207)||(11975499-11975699)
chr4 (9-178)||(50376066-50376234)
chr4 (277-323)||(11975777-11975823)
chr4 (338-391)||(44817663-44817716)
chr4 (396-428)||(16530001-16530033)
chr4 (389-428)||(44515966-44516005)
chr4 (389-428)||(44707610-44707649)
chr4 (10-196)||(9024286-9024471)
chr4 (398-428)||(36755283-36755313)
chr4 (338-379)||(2655024-2655065)
chr4 (338-379)||(6755832-6755873)
chr4 (342-379)||(22647114-22647151)
chr4 (338-379)||(36584427-36584468)
chr4 (338-379)||(40228545-40228586)
chr4 (338-379)||(51001479-51001520)
chr4 (156-196)||(2763046-2763086)
chr4 (396-428)||(36284569-36284601)
chr4 (396-428)||(46433115-46433147)
[»] chr3 (15 HSPs)
chr3 (15-204)||(32993913-32994101)
chr3 (9-178)||(3650524-3650692)
chr3 (51-191)||(7249128-7249267)
chr3 (338-377)||(1092992-1093031)
chr3 (338-392)||(7160405-7160459)
chr3 (398-428)||(26952437-26952467)
chr3 (338-384)||(50527748-50527794)
chr3 (338-384)||(52571539-52571585)
chr3 (338-379)||(18163721-18163762)
chr3 (338-379)||(29126158-29126199)
chr3 (60-112)||(7441473-7441524)
chr3 (396-428)||(20936053-20936085)
chr3 (400-428)||(26919261-26919289)
chr3 (278-321)||(32994171-32994215)
chr3 (400-428)||(47495570-47495598)
[»] chr2 (14 HSPs)
chr2 (18-207)||(9467726-9467914)
chr2 (32-196)||(40897471-40897634)
chr2 (112-205)||(1538027-1538119)
chr2 (276-323)||(1538189-1538236)
chr2 (338-379)||(38763717-38763758)
chr2 (396-428)||(25322979-25323011)
chr2 (338-384)||(6750120-6750166)
chr2 (338-384)||(38527172-38527218)
chr2 (338-379)||(34983279-34983320)
chr2 (396-428)||(5732730-5732762)
chr2 (396-428)||(9032589-9032621)
chr2 (339-379)||(28745609-28745649)
chr2 (339-379)||(36436297-36436337)
chr2 (400-428)||(43652651-43652679)
[»] chr7 (14 HSPs)
chr7 (10-205)||(25303672-25303868)
chr7 (389-428)||(965403-965442)
chr7 (396-428)||(1706456-1706488)
chr7 (338-386)||(8727718-8727766)
chr7 (389-428)||(33037388-33037427)
chr7 (398-428)||(1778801-1778831)
chr7 (398-428)||(12287249-12287279)
chr7 (338-388)||(26873697-26873747)
chr7 (339-384)||(17166864-17166909)
chr7 (278-323)||(25303945-25303990)
chr7 (338-379)||(44724177-44724218)
chr7 (400-428)||(26576043-26576071)
chr7 (156-196)||(40883473-40883513)
chr7 (400-428)||(41966164-41966192)
[»] chr5 (18 HSPs)
chr5 (15-136)||(41700855-41700976)
chr5 (15-137)||(26682881-26683002)
chr5 (15-188)||(36243966-36244137)
chr5 (338-391)||(9737820-9737873)
chr5 (9-84)||(42141257-42141331)
chr5 (71-196)||(5930020-5930144)
chr5 (338-379)||(19577293-19577334)
chr5 (338-379)||(26784915-26784956)
chr5 (338-379)||(43358413-43358454)
chr5 (398-428)||(23419024-23419054)
chr5 (398-428)||(35377844-35377874)
chr5 (338-379)||(3631262-3631303)
chr5 (338-379)||(13013368-13013409)
chr5 (399-428)||(19279600-19279629)
chr5 (341-386)||(20071329-20071374)
chr5 (338-379)||(26525343-26525384)
chr5 (398-426)||(6783516-6783544)
chr5 (396-428)||(27903720-27903752)
[»] scaffold0028 (1 HSPs)
scaffold0028 (123-191)||(33672-33740)
[»] scaffold0069 (1 HSPs)
scaffold0069 (396-428)||(60924-60956)
[»] scaffold0039 (1 HSPs)
scaffold0039 (398-428)||(94229-94259)
[»] scaffold0014 (1 HSPs)
scaffold0014 (338-384)||(64932-64978)
[»] scaffold0050 (1 HSPs)
scaffold0050 (338-379)||(19049-19090)
[»] scaffold0003 (1 HSPs)
scaffold0003 (341-386)||(303934-303979)
[»] scaffold1940 (1 HSPs)
scaffold1940 (396-428)||(705-737)
[»] scaffold0131 (1 HSPs)
scaffold0131 (339-379)||(11170-11210)
[»] scaffold0041 (1 HSPs)
scaffold0041 (156-196)||(82771-82811)


Alignment Details
Target: chr1 (Bit Score: 139; Significance: 2e-72; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 123 - 483
Target Start/End: Original strand, 1243510 - 1243871
Alignment:
Q  123 acaaaaatcatgtatactacttgtagaactgctgaaatctaaaatcgttgaaaaattgtttaaaatctcacaaattgatctatgannnnnnnnnnnnnn- 221  Q
    |||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||||||                   
T  1243510 acaaaaatcatgtatactacttgtagaactgccgaaatataaaaccgttgaaaaattgtttaaaatctcacaaattgatctatgattttatttatttatt 1243609  T
Q  222 ---ggattggccactatatcgctttatagagattcagatgtgccnnnnnnnnnnnnncgtcgtaaaattgtttaaaatctcgcagaatatacttataatt 318  Q
       |||||||||||||||||||||||||||||||||||||||||              |||||| ||||||||||||||||||| |||| || |||||||    
T  1243610 tttggattggccactatatcgctttatagagattcagatgtgccaaaaacaaaaaaatgtcgtacaattgtttaaaatctcgcaaaatagacctataatt 1243709  T
Q  319 gttaannnnnnnnnnnnnncgggtgggccgtggctcacctgagcccatgaagggctccgcctctgaatatatagattccacaaataattttatatcatta 418  Q
    |||||              |||||| |||||||||  || |||||||||||||||||||||||||||||    ||| |||||||||||||||||||||||    
T  1243710 gttaattttttaatttttccgggtgagccgtggctatcc-gagcccatgaagggctccgcctctgaata----gatcccacaaataattttatatcatta 1243804  T
Q  419 catttcaacatcgcat--ttattttaatattaaaaatgtgtcaaccacacaaaaaatgttggttctt 483  Q
    ||||||||||||| ||  |||||||||||||||||||||||||||||||||||||||||||||||||    
T  1243805 catttcaacatcgtatatttattttaatattaaaaatgtgtcaaccacacaaaaaatgttggttctt 1243871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 15 - 196
Target Start/End: Complemental strand, 45807387 - 45807207
Alignment:
Q  15 atgttaattgaaacaagttttagttgagagacaatgtaagggaggtttgaaacccaccacaaattagaaggcttgtaaacctccgctaaccagccaagca 114  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| ||||||  ||||||||||||||||||||    
T  45807387 atgttaattgaaacaagttttagttgagagacaatgtaagagaggtttgaaaccc-ccacaaattagaaggtttgtaagtctccgctaaccagccaagca 45807289  T
Q  115 tagacacgacaaaaatcatgtatactacttgtagaactgctgaaatctaaaatcgttgaaaaattgtttaaaatctcacaaa 196  Q
    |||| |||||||||||||  ||||||||| ||  ||| || ||||| ||||| ||||||||||||||||||||||| |||||    
T  45807288 tagatacgacaaaaatcacatatactactcgtgaaaccgccgaaatttaaaaccgttgaaaaattgtttaaaatcttacaaa 45807207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 10 - 77
Target Start/End: Original strand, 1243447 - 1243514
Alignment:
Q  10 tacagatgttaattgaaacaagttttagttgagagacaatgtaagggaggtttgaaacccaccacaaa 77  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1243447 tacagatgttaattgaaacaagttttagttgagagacaatgtaagggaggtttgaaacccaccacaaa 1243514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 9 - 196
Target Start/End: Original strand, 17879636 - 17879822
Alignment:
Q  9 atacagatgttaattgaaacaagttttagttgagagacaatgtaagggaggtttgaaacccaccacaaattagaaggcttgtaaacctccgctaaccagc 108  Q
    ||||| |||||||||| || || |||  ||||| | ||||| ||||||||||||||||| | | ||||||||||||| ||||||| ||| | |||||||     
T  17879636 atacaaatgttaattggaataattttcggttgacaaacaatataagggaggtttgaaactc-ctacaaattagaaggtttgtaaatctctgttaaccagt 17879734  T
Q  109 caagcatagacacgacaaaaatcatgtatactacttgtagaactgctgaaatctaaaatcgttgaaaaattgtttaaaatctcacaaa 196  Q
    ||| |||||||| || ||||||||||||| | |||||| |||| |||||||| |||||   |||||||| |||||||||||| |||||    
T  17879735 caaacatagacatgaaaaaaatcatgtatgccacttgtggaaccgctgaaatttaaaactattgaaaaaatgtttaaaatcttacaaa 17879822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 338 - 388
Target Start/End: Complemental strand, 37125737 - 37125687
Alignment:
Q  338 cgggtgggccgtggctcacctgagcccatgaagggctccgcctctgaatat 388  Q
    ||||||||||||||| ||||| |||||||||||||||||||| ||||||||    
T  37125737 cgggtgggccgtggcccacctcagcccatgaagggctccgccactgaatat 37125687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 276 - 323
Target Start/End: Complemental strand, 45807118 - 45807071
Alignment:
Q  276 cgtcgtaaaattgtttaaaatctcgcagaatatacttataattgttaa 323  Q
    ||||||||||||||||||||||||||| |||| || ||||||||||||    
T  45807118 cgtcgtaaaattgtttaaaatctcgcaaaatagacctataattgttaa 45807071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 396 - 428
Target Start/End: Original strand, 20381135 - 20381167
Alignment:
Q  396 ccacaaataattttatatcattacatttcaaca 428  Q
    |||||||||||||||||||||||||||||||||    
T  20381135 ccacaaataattttatatcattacatttcaaca 20381167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 389 - 428
Target Start/End: Original strand, 9693933 - 9693972
Alignment:
Q  389 atagattccacaaataattttatatcattacatttcaaca 428  Q
    |||| |||||||||||||| ||||||||||||||||||||    
T  9693933 ataggttccacaaataattctatatcattacatttcaaca 9693972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 394 - 428
Target Start/End: Complemental strand, 4085704 - 4085670
Alignment:
Q  394 ttccacaaataattttatatcattacatttcaaca 428  Q
    |||| ||||||||||||||||||||||||||||||    
T  4085704 ttccgcaaataattttatatcattacatttcaaca 4085670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 338 - 384
Target Start/End: Complemental strand, 6849797 - 6849751
Alignment:
Q  338 cgggtgggccgtggctcacctgagcccatgaagggctccgcctctga 384  Q
    ||||||||||||||| ||||  |||||||||||||||||||| ||||    
T  6849797 cgggtgggccgtggcccaccccagcccatgaagggctccgccactga 6849751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 338 - 384
Target Start/End: Original strand, 17285407 - 17285453
Alignment:
Q  338 cgggtgggccgtggctcacctgagcccatgaagggctccgcctctga 384  Q
    ||||||||||||||| ||||  |||||||||||||||||||| ||||    
T  17285407 cgggtgggccgtggcccaccccagcccatgaagggctccgccactga 17285453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 398 - 428
Target Start/End: Original strand, 32714175 - 32714205
Alignment:
Q  398 acaaataattttatatcattacatttcaaca 428  Q
    |||||||||||||||||||||||||||||||    
T  32714175 acaaataattttatatcattacatttcaaca 32714205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 338 - 379
Target Start/End: Complemental strand, 8530127 - 8530086
Alignment:
Q  338 cgggtgggccgtggctcacctgagcccatgaagggctccgcc 379  Q
    ||||||||||||||| ||||  ||||||||||||||||||||    
T  8530127 cgggtgggccgtggcccaccccagcccatgaagggctccgcc 8530086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 338 - 379
Target Start/End: Original strand, 16693062 - 16693103
Alignment:
Q  338 cgggtgggccgtggctcacctgagcccatgaagggctccgcc 379  Q
    ||||||||||||||| ||||  ||||||||||||||||||||    
T  16693062 cgggtgggccgtggcccaccccagcccatgaagggctccgcc 16693103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 278 - 323
Target Start/End: Original strand, 17879914 - 17879959
Alignment:
Q  278 tcgtaaaattgtttaaaatctcgcagaatatacttataattgttaa 323  Q
    ||||||||||||||||||||||||| |||| || ||||||| ||||    
T  17879914 tcgtaaaattgtttaaaatctcgcaaaataaacatataattattaa 17879959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 338 - 379
Target Start/End: Original strand, 33012170 - 33012211
Alignment:
Q  338 cgggtgggccgtggctcacctgagcccatgaagggctccgcc 379  Q
    ||||||||||||||| ||||  ||||||||||||||||||||    
T  33012170 cgggtgggccgtggcccaccccagcccatgaagggctccgcc 33012211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 342 - 379
Target Start/End: Original strand, 48708535 - 48708572
Alignment:
Q  342 tgggccgtggctcacctgagcccatgaagggctccgcc 379  Q
    ||||||||||||||||  ||||||||||||||||||||    
T  48708535 tgggccgtggctcaccccagcccatgaagggctccgcc 48708572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 400 - 428
Target Start/End: Original strand, 25388988 - 25389016
Alignment:
Q  400 aaataattttatatcattacatttcaaca 428  Q
    |||||||||||||||||||||||||||||    
T  25388988 aaataattttatatcattacatttcaaca 25389016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 400 - 428
Target Start/End: Original strand, 50378209 - 50378237
Alignment:
Q  400 aaataattttatatcattacatttcaaca 428  Q
    |||||||||||||||||||||||||||||    
T  50378209 aaataattttatatcattacatttcaaca 50378237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 132; Significance: 2e-68; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 18 - 207
Target Start/End: Complemental strand, 18235282 - 18235089
Alignment:
Q  18 ttaattgaaacaagttttagttgagagacaatgtaagggaggtttgaaacccaccacaaattagaaggcttgtaaacctccgcta---accagccaagca 114  Q
    |||||||||| |||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| |||||| |||||||||   ||||||||||||    
T  18235282 ttaattgaaataagttttagttgagagacaatgtaagagaggtttgaaaccccccacaaattagaaggtttgtaagcctccgctactaaccagccaagca 18235183  T
Q  115 tagacacgacaaaaatcatgtatactacttgtagaactgctgaaatctaaaatcgttgaaaaattgtttaaaatctcac-aaattgatctatga 207  Q
    |||||||||||||||||||||||||||||||| ||||||| ||||||| ||| ||||||||||||||||||||||| || ||||||||||||||    
T  18235182 tagacacgacaaaaatcatgtatactacttgtggaactgccgaaatctgaaaccgttgaaaaattgtttaaaatcttacaaaattgatctatga 18235089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 15 - 196
Target Start/End: Original strand, 2399087 - 2399271
Alignment:
Q  15 atgttaattgaaacaagttttagttgagagacaatg----taagggaggtttgaaacccaccacaaattagaaggcttgtaaacctccgctaaccagcca 110  Q
    ||||||||| ||||||||||||||||| |||||||     || |||||||||||||||| | || ||| |||||| ||||||||||||||||||||||||    
T  2399087 atgttaatttaaacaagttttagttgacagacaatcaatatacgggaggtttgaaaccctc-acgaatcagaaggtttgtaaacctccgctaaccagcca 2399185  T
Q  111 agcatagacacgacaaaaatcatgtatactacttgtagaactgctgaaatctaaaatcgttgaaaaattgtttaaaatctcacaaa 196  Q
    |||||||| |||||||||||||||||||||| |||| |||| || |||||||||||   ||||||||||||||||||||| |||||    
T  2399186 agcatagaaacgacaaaaatcatgtatactatttgtggaacggccgaaatctaaaacaattgaaaaattgtttaaaatcttacaaa 2399271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 15 - 205
Target Start/End: Complemental strand, 2045233 - 2045045
Alignment:
Q  15 atgttaattgaaacaagttttagttgagagacaatgtaagggaggtttgaaacccaccacaaattagaaggcttgtaaacctccgctaaccagccaagca 114  Q
    ||||||||||||| ||||||||||| | ||| |||  |||||| ||||||||||| ||||||||||||||| ||||||||||  | ||||||  |||  |    
T  2045233 atgttaattgaaataagttttagttcaaagataat--aagggatgtttgaaaccctccacaaattagaagg-ttgtaaacctttgttaaccaatcaacta 2045137  T
Q  115 tagacacgacaaaaatcatgtatactacttgtagaactgctgaaatctaaaatcgttgaaaaattgtttaaaatctcac-aaattgatctat 205  Q
    |||||||||||||||||||||||| || |||| ||||  | ||||||||||| |||||||||||| ||||||||||||| ||||||||||||    
T  2045136 tagacacgacaaaaatcatgtataatatttgtggaaccaccgaaatctaaaaccgttgaaaaattctttaaaatctcacaaaattgatctat 2045045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 276 - 323
Target Start/End: Complemental strand, 2044976 - 2044929
Alignment:
Q  276 cgtcgtaaaattgtttaaaatctcgcagaatatacttataattgttaa 323  Q
    ||||||||||||||||||||||||||| ||||||| ||||||||||||    
T  2044976 cgtcgtaaaattgtttaaaatctcgcataatatacatataattgttaa 2044929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 389 - 428
Target Start/End: Original strand, 15134923 - 15134962
Alignment:
Q  389 atagattccacaaataattttatatcattacatttcaaca 428  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  15134923 atagattccacaaataattttatatcattacatttcaaca 15134962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 278 - 321
Target Start/End: Original strand, 2399359 - 2399402
Alignment:
Q  278 tcgtaaaattgtttaaaatctcgcagaatatacttataattgtt 321  Q
    |||||||||||||||||||||||||||||| || ||||||||||    
T  2399359 tcgtaaaattgtttaaaatctcgcagaatagacctataattgtt 2399402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 277 - 323
Target Start/End: Complemental strand, 18235018 - 18234972
Alignment:
Q  277 gtcgtaaaattgtttaaaatctcgcagaatatacttataattgttaa 323  Q
    |||||||||||||||||||||||||| ||||||| ||||||| ||||    
T  18235018 gtcgtaaaattgtttaaaatctcgcaaaatatacctataattattaa 18234972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 389 - 428
Target Start/End: Complemental strand, 521374 - 521335
Alignment:
Q  389 atagattccacaaataattttatatcattacatttcaaca 428  Q
    |||||| |||||||||||| ||||||||||||||||||||    
T  521374 atagatcccacaaataattatatatcattacatttcaaca 521335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 398 - 428
Target Start/End: Complemental strand, 22747157 - 22747127
Alignment:
Q  398 acaaataattttatatcattacatttcaaca 428  Q
    |||||||||||||||||||||||||||||||    
T  22747157 acaaataattttatatcattacatttcaaca 22747127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 398 - 428
Target Start/End: Complemental strand, 32183976 - 32183946
Alignment:
Q  398 acaaataattttatatcattacatttcaaca 428  Q
    |||||||||||||||||||||||||||||||    
T  32183976 acaaataattttatatcattacatttcaaca 32183946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 400 - 428
Target Start/End: Complemental strand, 15611677 - 15611649
Alignment:
Q  400 aaataattttatatcattacatttcaaca 428  Q
    |||||||||||||||||||||||||||||    
T  15611677 aaataattttatatcattacatttcaaca 15611649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 123; Significance: 6e-63; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 10 - 207
Target Start/End: Original strand, 26149219 - 26149416
Alignment:
Q  10 tacagatgttaattgaaacaagttttagttgagagacaatgtaagggaggtttgaaacccaccacaaattagaaggcttgtaaacctccgctaaccagcc 109  Q
    |||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||  |||||||||  |||||||| ||    
T  26149219 tacaaatgttaattgaaacaagttttagttgagagacaatgcaagggaggtttgaaaccccccacaaattagaaggtgtgtaaacctttgctaaccaccc 26149318  T
Q  110 aagcatagacacgacaaaaatcatgtatactacttgtagaactgctgaaatctaaaatcgttgaaaaattgtttaaaatctcac-aaattgatctatga 207  Q
    ||||||||||||||||||||||||||||||||||||  |||  || ||||||||||| ||||| ||||||||||||| |||||| ||||||||||||||    
T  26149319 aagcatagacacgacaaaaatcatgtatactacttgcggaatcgccgaaatctaaaaccgttg-aaaattgtttaaagtctcacaaaattgatctatga 26149416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 46 - 196
Target Start/End: Original strand, 36257426 - 36257576
Alignment:
Q  46 caatgtaagggaggtttgaaacccaccacaaattagaaggcttgtaaacctccgctaaccagccaagcatagacacgac-aaaaatcatgtatactactt 144  Q
    |||| |||||||| |||||||||| ||||||||||||||| ||||||||||| ||||  |||| ||| ||| | | ||| |||||||| ||||   | ||    
T  36257426 caatataagggag-tttgaaaccccccacaaattagaaggtttgtaaacctctgctactcagctaagtataaatatgacaaaaaatcacgtatgtcattt 36257524  T
Q  145 gtagaactgctgaaatctaaaatcgttgaaaaattgtttaaaatctcacaaa 196  Q
     ||||||||  |||| ||||||  ||||||||||||||||||| ||| ||||    
T  36257525 ttagaactgtcgaaaactaaaactgttgaaaaattgtttaaaaactcgcaaa 36257576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 389 - 428
Target Start/End: Original strand, 37127550 - 37127589
Alignment:
Q  389 atagattccacaaataattttatatcattacatttcaaca 428  Q
    |||||| |||||||||||||||||||||||||||||||||    
T  37127550 atagatcccacaaataattttatatcattacatttcaaca 37127589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 389 - 428
Target Start/End: Complemental strand, 40978873 - 40978834
Alignment:
Q  389 atagattccacaaataattttatatcattacatttcaaca 428  Q
    |||| |||||||||||||||||||||||||||||||||||    
T  40978873 ataggttccacaaataattttatatcattacatttcaaca 40978834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 396 - 428
Target Start/End: Original strand, 1598027 - 1598059
Alignment:
Q  396 ccacaaataattttatatcattacatttcaaca 428  Q
    |||||||||||||||||||||||||||||||||    
T  1598027 ccacaaataattttatatcattacatttcaaca 1598059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 396 - 428
Target Start/End: Complemental strand, 20765802 - 20765770
Alignment:
Q  396 ccacaaataattttatatcattacatttcaaca 428  Q
    |||||||||||||||||||||||||||||||||    
T  20765802 ccacaaataattttatatcattacatttcaaca 20765770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 338 - 388
Target Start/End: Complemental strand, 1098102 - 1098052
Alignment:
Q  338 cgggtgggccgtggctcacctgagcccatgaagggctccgcctctgaatat 388  Q
    ||||||||||||||| ||||| |  ||||||||||||||||| ||||||||    
T  1098102 cgggtgggccgtggcccacctcacgccatgaagggctccgccactgaatat 1098052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 338 - 384
Target Start/End: Complemental strand, 9830652 - 9830606
Alignment:
Q  338 cgggtgggccgtggctcacctgagcccatgaagggctccgcctctga 384  Q
    ||||||||||||||| ||||  |||||||||||||||||||| ||||    
T  9830652 cgggtgggccgtggcccaccccagcccatgaagggctccgccactga 9830606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 146 - 196
Target Start/End: Original strand, 33180495 - 33180545
Alignment:
Q  146 tagaactgctgaaatctaaaatcgttgaaaaattgtttaaaatctcacaaa 196  Q
    |||||| || |||| ||||||| |||||||||||| |||||||||||||||    
T  33180495 tagaaccgccgaaaactaaaattgttgaaaaattgattaaaatctcacaaa 33180545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 394 - 428
Target Start/End: Complemental strand, 43429524 - 43429490
Alignment:
Q  394 ttccacaaataattttatatcattacatttcaaca 428  Q
    |||||||||||||| ||||||||||||||||||||    
T  43429524 ttccacaaataattctatatcattacatttcaaca 43429490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 123 - 196
Target Start/End: Complemental strand, 11636025 - 11635952
Alignment:
Q  123 acaaaaatcatgtatactacttgtagaactgctgaaatctaaaatcgttgaaaaattgtttaaaatctcacaaa 196  Q
    ||||||||||||||| | |||| |  |||||  |||| ||| | |||||||||||||||||||| |||||||||    
T  11636025 acaaaaatcatgtatgccacttttgaaactgtggaaaactatattcgttgaaaaattgtttaaagtctcacaaa 11635952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 338 - 379
Target Start/End: Original strand, 34934370 - 34934411
Alignment:
Q  338 cgggtgggccgtggctcacctgagcccatgaagggctccgcc 379  Q
    ||||||||||||||| ||||  ||||||||||||||||||||    
T  34934370 cgggtgggccgtggcccaccccagcccatgaagggctccgcc 34934411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 402 - 455
Target Start/End: Original strand, 38560193 - 38560248
Alignment:
Q  402 ataattttatatcattacatttcaacat--cgcatttattttaatattaaaaatgt 455  Q
    |||| |||||||||| |||||| |||||  | ||||||||||||||||||||||||    
T  38560193 ataactttatatcatcacattttaacattactcatttattttaatattaaaaatgt 38560248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 396 - 428
Target Start/End: Complemental strand, 40216556 - 40216524
Alignment:
Q  396 ccacaaataattttatatcattacatttcaaca 428  Q
    |||| ||||||||||||||||||||||||||||    
T  40216556 ccaccaataattttatatcattacatttcaaca 40216524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 396 - 428
Target Start/End: Complemental strand, 42845363 - 42845331
Alignment:
Q  396 ccacaaataattttatatcattacatttcaaca 428  Q
    |||||||||||| ||||||||||||||||||||    
T  42845363 ccacaaataattctatatcattacatttcaaca 42845331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 106; Significance: 8e-53; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 9 - 205
Target Start/End: Complemental strand, 32151438 - 32151242
Alignment:
Q  9 atacagatgttaattgaaacaagttttagttgagagacaatgtaagggaggtttgaaacccaccacaaattagaaggcttgtaaacctccgctaaccagc 108  Q
    ||||| || |||||||||||||||||||||| |||||||| |||||||||||||||||||| | |||||||||||||  ||||||||||| |||| ||||    
T  32151438 atacaaatattaattgaaacaagttttagttaagagacaacgtaagggaggtttgaaaccccctacaaattagaaggtatgtaaacctccactaatcagc 32151339  T
Q  109 caagcatagacacgacaaaaatcatgtatactacttgtagaactgctgaaatctaaaatcgttgaaaaattgtttaaaatctcac-aaattgatctat 205  Q
    |||||||| |||| |||||||||||||||||||||    |||| |||||||||||||| |||||||||| ||||| ||||||||| ||||||||||||    
T  32151338 caagcataaacacaacaaaaatcatgtatactactccg-gaaccgctgaaatctaaaaccgttgaaaaaatgttttaaatctcacaaaattgatctat 32151242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 15 - 207
Target Start/End: Original strand, 11975499 - 11975699
Alignment:
Q  15 atgttaattgaaacaagttttagttgagagacaatgtaagggaggtttgaaacccaccacaaattagaaggcttgtaaacctccgctaaccagccaagca 114  Q
    |||||||||||||| |||||||||||||||||||||||| ||||||||||||||| |||||||||||||||  ||||||||||  |||| ||||||||||    
T  11975499 atgttaattgaaaccagttttagttgagagacaatgtaaaggaggtttgaaaccccccacaaattagaagggctgtaaacctctactaatcagccaagca 11975598  T
Q  115 tagacacgacaaaaatcatgtata----ctacttgtagaactgc---tgaaatctaaaatcgttgaaaaattgtttaaaatctcaca-aattgatctatg 206  Q
    |||||| |||||||||||||||||    |||||||| |||| ||   |||||||||||| | |||||||||| ||||||||||| || ||||||| ||||    
T  11975599 tagacatgacaaaaatcatgtatatatactacttgtggaaccgccgatgaaatctaaaaccattgaaaaattatttaaaatctctcataattgatttatg 11975698  T
Q  207 a 207  Q
    |    
T  11975699 a 11975699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 9 - 178
Target Start/End: Original strand, 50376066 - 50376234
Alignment:
Q  9 atacagatgttaattgaaacaagttttagttgagagacaatgtaagggaggtttgaaacccaccacaaattagaaggcttgtaaacctccgctaaccagc 108  Q
    ||||| |||||||||| ||||| ||| |||||| | ||||| ||||||||||||||||| | |||||||||||||||  | |||||||||| ||||||      
T  50376066 atacaaatgttaattggaacaattttcagttgacaaacaatataagggaggtttgaaactc-ccacaaattagaaggtctttaaacctccgttaaccaat 50376164  T
Q  109 caagcatagacacgacaaaaatcatgtatactacttgtagaactgctgaaatctaaaatcgttgaaaaat 178  Q
    |||| ||| ||| || |||||||| ||| || |||| |  || ||| |||||||||||  ||||||||||    
T  50376165 caagtatatacatgaaaaaaatcacgtaaaccacttttgaaattgccgaaatctaaaactgttgaaaaat 50376234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 277 - 323
Target Start/End: Original strand, 11975777 - 11975823
Alignment:
Q  277 gtcgtaaaattgtttaaaatctcgcagaatatacttataattgttaa 323  Q
    |||| |||||||||||||||||||||||||| || ||||||||||||    
T  11975777 gtcgaaaaattgtttaaaatctcgcagaatagacctataattgttaa 11975823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 338 - 391
Target Start/End: Original strand, 44817663 - 44817716
Alignment:
Q  338 cgggtgggccgtggctcacctgagcccatgaagggctccgcctctgaatatata 391  Q
    ||||||||||||||| ||||  |||||||||||||||||||| ||| |||||||    
T  44817663 cgggtgggccgtggcccaccccagcccatgaagggctccgccactgtatatata 44817716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 396 - 428
Target Start/End: Complemental strand, 16530033 - 16530001
Alignment:
Q  396 ccacaaataattttatatcattacatttcaaca 428  Q
    |||||||||||||||||||||||||||||||||    
T  16530033 ccacaaataattttatatcattacatttcaaca 16530001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 389 - 428
Target Start/End: Original strand, 44515966 - 44516005
Alignment:
Q  389 atagattccacaaataattttatatcattacatttcaaca 428  Q
    |||||| |||| ||||||||||||||||||||||||||||    
T  44515966 atagatcccactaataattttatatcattacatttcaaca 44516005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 389 - 428
Target Start/End: Original strand, 44707610 - 44707649
Alignment:
Q  389 atagattccacaaataattttatatcattacatttcaaca 428  Q
    |||||| |||||||||||| ||||||||||||||||||||    
T  44707610 atagatcccacaaataattatatatcattacatttcaaca 44707649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 10 - 196
Target Start/End: Complemental strand, 9024471 - 9024286
Alignment:
Q  10 tacagatgttaattgaaacaagttttagttgagagacaatgtaagggaggtttgaaacccaccacaaattagaaggcttgtaaacctccgctaaccagcc 109  Q
    |||| ||||||||| |||||| ||||| |||| | ||||  |||  ||||||| |||||| |||||||||||| || ||||||  |||   ||||||| |    
T  9024471 tacaaatgttaattaaaacaatttttatttgatatacaacataaatgaggttttaaaccc-ccacaaattagatggtttgtaatactctattaaccagtc 9024373  T
Q  110 aagcatagacacgacaaaaatcatgtatactacttgtagaactgctgaaatctaaaatcgttgaaaaattgtttaaaatctcacaaa 196  Q
     ||||||| || || ||||||||  |||   |||| | |||  |  ||||||||||| |||||||||||| || |||||||||||||    
T  9024372 cagcataggcatgataaaaatcacatatgacacttatggaatcgtcgaaatctaaaaccgttgaaaaattattaaaaatctcacaaa 9024286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 398 - 428
Target Start/End: Complemental strand, 36755313 - 36755283
Alignment:
Q  398 acaaataattttatatcattacatttcaaca 428  Q
    |||||||||||||||||||||||||||||||    
T  36755313 acaaataattttatatcattacatttcaaca 36755283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 338 - 379
Target Start/End: Original strand, 2655024 - 2655065
Alignment:
Q  338 cgggtgggccgtggctcacctgagcccatgaagggctccgcc 379  Q
    ||||||||||||||| ||||  ||||||||||||||||||||    
T  2655024 cgggtgggccgtggcccaccccagcccatgaagggctccgcc 2655065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 338 - 379
Target Start/End: Complemental strand, 6755873 - 6755832
Alignment:
Q  338 cgggtgggccgtggctcacctgagcccatgaagggctccgcc 379  Q
    ||||||||||||||| ||||  ||||||||||||||||||||    
T  6755873 cgggtgggccgtggcccaccccagcccatgaagggctccgcc 6755832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 342 - 379
Target Start/End: Complemental strand, 22647151 - 22647114
Alignment:
Q  342 tgggccgtggctcacctgagcccatgaagggctccgcc 379  Q
    ||||||||||| ||||| ||||||||||||||||||||    
T  22647151 tgggccgtggcccacctcagcccatgaagggctccgcc 22647114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 338 - 379
Target Start/End: Complemental strand, 36584468 - 36584427
Alignment:
Q  338 cgggtgggccgtggctcacctgagcccatgaagggctccgcc 379  Q
    ||||||||||||||| ||||  ||||||||||||||||||||    
T  36584468 cgggtgggccgtggcccaccccagcccatgaagggctccgcc 36584427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 338 - 379
Target Start/End: Original strand, 40228545 - 40228586
Alignment:
Q  338 cgggtgggccgtggctcacctgagcccatgaagggctccgcc 379  Q
    ||||||||||||||| ||||  ||||||||||||||||||||    
T  40228545 cgggtgggccgtggcccaccccagcccatgaagggctccgcc 40228586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 338 - 379
Target Start/End: Complemental strand, 51001520 - 51001479
Alignment:
Q  338 cgggtgggccgtggctcacctgagcccatgaagggctccgcc 379  Q
    ||||||||||||||| ||||  ||||||||||||||||||||    
T  51001520 cgggtgggccgtggcccaccccagcccatgaagggctccgcc 51001479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 156 - 196
Target Start/End: Complemental strand, 2763086 - 2763046
Alignment:
Q  156 gaaatctaaaatcgttgaaaaattgtttaaaatctcacaaa 196  Q
    |||| ||||||||||||||||||||| ||||||||| ||||    
T  2763086 gaaaactaaaatcgttgaaaaattgtataaaatctctcaaa 2763046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 396 - 428
Target Start/End: Original strand, 36284569 - 36284601
Alignment:
Q  396 ccacaaataattttatatcattacatttcaaca 428  Q
    |||||||||||| ||||||||||||||||||||    
T  36284569 ccacaaataattctatatcattacatttcaaca 36284601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 396 - 428
Target Start/End: Original strand, 46433115 - 46433147
Alignment:
Q  396 ccacaaataattttatatcattacatttcaaca 428  Q
    |||||||||||| ||||||||||||||||||||    
T  46433115 ccacaaataattctatatcattacatttcaaca 46433147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 96; Significance: 7e-47; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 15 - 204
Target Start/End: Original strand, 32993913 - 32994101
Alignment:
Q  15 atgttaattgaaacaagttttagttgagagacaatgtaagggaggtttgaaacccaccacaaattagaaggcttgtaaacctccgctaaccagccaagca 114  Q
    ||||| |||||||||| |||||||||||||||||   |||||||||||||||||||| | |||||||||    ||||||||   ||||||||||||||||    
T  32993913 atgtttattgaaacaaattttagttgagagacaag--aagggaggtttgaaacccactataaattagaatttatgtaaacccttgctaaccagccaagca 32994010  T
Q  115 tagacacgacaaaaatcatgtatactacttgtagaactgctgaaatctaaaatcgttgaaaaattgtttaaaatctcacaaa-ttgatcta 204  Q
    ||||||| |||||||||||||||||||||||| |||| || |||||||| || | ||||||||||||||||||||||||||| ||||||||    
T  32994011 tagacaccacaaaaatcatgtatactacttgtggaaccgccgaaatctagaaccattgaaaaattgtttaaaatctcacaaagttgatcta 32994101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 9 - 178
Target Start/End: Complemental strand, 3650692 - 3650524
Alignment:
Q  9 atacagatgttaattgaaacaagttttagttgagagacaatgtaagggaggtttgaaacccaccacaaattagaaggcttgtaaacctccgctaaccagc 108  Q
    ||||| |||||||||| ||||| |||||||||| | ||||| | ||||||||||||||||| ||| ||||||||||| ||||||||||||||||||||||    
T  3650692 atacaaatgttaattggaacaatttttagttgacaaacaatatgagggaggtttgaaaccc-ccagaaattagaaggtttgtaaacctccgctaaccagc 3650594  T
Q  109 caagcatagacacgacaaaaatcatgtatactacttgtagaactgctgaaatctaaaatcgttgaaaaat 178  Q
    |||||||||||| ||||| |||||  || || |||| | |||| || |||||||||||  ||||||||||    
T  3650593 caagcatagacatgacaacaatcacataaaccacttttggaaccgccgaaatctaaaactgttgaaaaat 3650524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 51 - 191
Target Start/End: Complemental strand, 7249267 - 7249128
Alignment:
Q  51 taagggaggtttgaaacccaccacaaattagaaggcttgtaaacctccgctaaccagccaagcatagacacgacaaaaatcatgtatactacttgtagaa 150  Q
    ||||||||||||||||||| ||  ||||||||||  ||||||||||| |||||||||||| | |||  |||||||||| ||| |||| |||||| |  ||    
T  7249267 taagggaggtttgaaaccc-ccgtaaattagaagatttgtaaacctctgctaaccagccatgtataatcacgacaaaactcacgtatgctacttttgaaa 7249169  T
Q  151 ctgctgaaatctaaaatcgttgaaaaattgtttaaaatctc 191  Q
    ||||  |||  |||||| |||||||||||||||||||||||    
T  7249168 ctgccaaaaattaaaattgttgaaaaattgtttaaaatctc 7249128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 338 - 377
Target Start/End: Original strand, 1092992 - 1093031
Alignment:
Q  338 cgggtgggccgtggctcacctgagcccatgaagggctccg 377  Q
    ||||||||||||||| ||||| ||||||||||||||||||    
T  1092992 cgggtgggccgtggcccacctcagcccatgaagggctccg 1093031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 338 - 392
Target Start/End: Original strand, 7160405 - 7160459
Alignment:
Q  338 cgggtgggccgtggctcacctgagcccatgaagggctccgcctctgaatatatag 392  Q
    ||||||||||||||| ||||  |||||||||| ||||||||| ||| ||||||||    
T  7160405 cgggtgggccgtggcccaccccagcccatgaaaggctccgccactgcatatatag 7160459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 398 - 428
Target Start/End: Original strand, 26952437 - 26952467
Alignment:
Q  398 acaaataattttatatcattacatttcaaca 428  Q
    |||||||||||||||||||||||||||||||    
T  26952437 acaaataattttatatcattacatttcaaca 26952467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 338 - 384
Target Start/End: Original strand, 50527748 - 50527794
Alignment:
Q  338 cgggtgggccgtggctcacctgagcccatgaagggctccgcctctga 384  Q
    ||||||||||||||| ||||  |||||||||||||||||||| ||||    
T  50527748 cgggtgggccgtggcccaccccagcccatgaagggctccgccactga 50527794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 338 - 384
Target Start/End: Original strand, 52571539 - 52571585
Alignment:
Q  338 cgggtgggccgtggctcacctgagcccatgaagggctccgcctctga 384  Q
    ||||||||||||||| ||||  |||||||||||||||||||| ||||    
T  52571539 cgggtgggccgtggcccaccccagcccatgaagggctccgccactga 52571585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 338 - 379
Target Start/End: Complemental strand, 18163762 - 18163721
Alignment:
Q  338 cgggtgggccgtggctcacctgagcccatgaagggctccgcc 379  Q
    ||||||||||||||| ||||  ||||||||||||||||||||    
T  18163762 cgggtgggccgtggcccaccccagcccatgaagggctccgcc 18163721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 338 - 379
Target Start/End: Original strand, 29126158 - 29126199
Alignment:
Q  338 cgggtgggccgtggctcacctgagcccatgaagggctccgcc 379  Q
    ||||||||||||||| ||||  ||||||||||||||||||||    
T  29126158 cgggtgggccgtggcccaccccagcccatgaagggctccgcc 29126199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 60 - 112
Target Start/End: Original strand, 7441473 - 7441524
Alignment:
Q  60 tttgaaacccaccacaaattagaaggcttgtaaacctccgctaaccagccaag 112  Q
    |||||||||| ||| |||| |||||| ||| ||||||||||||||||||||||    
T  7441473 tttgaaaccc-ccaaaaatcagaaggtttggaaacctccgctaaccagccaag 7441524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 396 - 428
Target Start/End: Original strand, 20936053 - 20936085
Alignment:
Q  396 ccacaaataattttatatcattacatttcaaca 428  Q
    |||||||||||| ||||||||||||||||||||    
T  20936053 ccacaaataattctatatcattacatttcaaca 20936085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 400 - 428
Target Start/End: Original strand, 26919261 - 26919289
Alignment:
Q  400 aaataattttatatcattacatttcaaca 428  Q
    |||||||||||||||||||||||||||||    
T  26919261 aaataattttatatcattacatttcaaca 26919289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 278 - 321
Target Start/End: Original strand, 32994171 - 32994215
Alignment:
Q  278 tcgtaaaattgtttaaaatctcgcagaatatac-ttataattgtt 321  Q
    |||||||||||||||||||||| ||||||| || |||||||||||    
T  32994171 tcgtaaaattgtttaaaatctcacagaataaactttataattgtt 32994215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 400 - 428
Target Start/End: Complemental strand, 47495598 - 47495570
Alignment:
Q  400 aaataattttatatcattacatttcaaca 428  Q
    |||||||||||||||||||||||||||||    
T  47495598 aaataattttatatcattacatttcaaca 47495570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 95; Significance: 3e-46; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 18 - 207
Target Start/End: Complemental strand, 9467914 - 9467726
Alignment:
Q  18 ttaattgaaacaagttttagttgagagacaatgtaagggaggtttgaaacccaccacaaattagaaggcttgtaaacctccgctaaccagccaagcatag 117  Q
    |||||||||||||||||||||||||||||  ||||||||||||||||||||| || ||||||||| ||  |||||||||  ||||| |||| |||||||     
T  9467914 ttaattgaaacaagttttagttgagagaccgtgtaagggaggtttgaaaccc-cctcaaattagatggtatgtaaacctttgctaaacagcgaagcataa 9467816  T
Q  118 acacgacaaaaatcatgtatactacttgtagaactgctgaaatctaaaatcgttgaaaaattgtttaaaatctcac-aaattgatctatga 207  Q
    | |||| ||||||||||||| ||||||||||||| || ||||| |||||  ||||||||||||||||||||||||| ||||||||||||||    
T  9467815 atacgataaaaatcatgtat-ctacttgtagaaccgccgaaatttaaaactgttgaaaaattgtttaaaatctcacaaaattgatctatga 9467726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 32 - 196
Target Start/End: Original strand, 40897471 - 40897634
Alignment:
Q  32 ttttagttgagagacaatgtaagggaggtttgaaacccaccacaaattagaaggcttgtaaacctccgctaaccagccaagcatagacacgacaaaaatc 131  Q
    |||||||||| | ||||| ||| ||||||||||||||| |||||||||||||||  ||||| ||||  |||||||  ||| |||| ||| ||||||||||    
T  40897471 ttttagttgacatacaatataaaggaggtttgaaaccccccacaaattagaaggtatgtaatcctctactaaccaatcaaacatatacatgacaaaaatc 40897570  T
Q  132 atgtatactacttgtagaactgctgaaatctaaaatcgttgaaaaattgtttaaaatctcacaaa 196  Q
    |||||| |||||| | |||  || ||||||| ||| |||||||||||||||||||||||||||||    
T  40897571 atgtatgctacttatggaatcgccgaaatct-aaaccgttgaaaaattgtttaaaatctcacaaa 40897634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 112 - 205
Target Start/End: Original strand, 1538027 - 1538119
Alignment:
Q  112 gcatagacacgacaaaaatcatgtatactacttgtagaact-gctgaaatctaaaatcgttgaaaaattgtttaaaatctcacaaattgatctat 205  Q
    ||||| |||||||||||||||||||||||| ||  |||| | || |||||||||||||||||||||  |||||||||||||| ||||| ||||||    
T  1538027 gcatatacacgacaaaaatcatgtatactatttc-agaaatcgccgaaatctaaaatcgttgaaaagctgtttaaaatctca-aaatttatctat 1538119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 276 - 323
Target Start/End: Original strand, 1538189 - 1538236
Alignment:
Q  276 cgtcgtaaaattgtttaaaatctcgcagaatatacttataattgttaa 323  Q
    ||||||||||||||||||||||||||| |||| || ||||||||||||    
T  1538189 cgtcgtaaaattgtttaaaatctcgcataatagacctataattgttaa 1538236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 338 - 379
Target Start/End: Complemental strand, 38763758 - 38763717
Alignment:
Q  338 cgggtgggccgtggctcacctgagcccatgaagggctccgcc 379  Q
    ||||||||||||||| ||||| ||||||||||||||||||||    
T  38763758 cgggtgggccgtggcccacctcagcccatgaagggctccgcc 38763717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 396 - 428
Target Start/End: Complemental strand, 25323011 - 25322979
Alignment:
Q  396 ccacaaataattttatatcattacatttcaaca 428  Q
    |||||||||||||||||||||||||||||||||    
T  25323011 ccacaaataattttatatcattacatttcaaca 25322979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 338 - 384
Target Start/End: Original strand, 6750120 - 6750166
Alignment:
Q  338 cgggtgggccgtggctcacctgagcccatgaagggctccgcctctga 384  Q
    ||||||||||||||| ||||  |||||||||||||||||||| ||||    
T  6750120 cgggtgggccgtggcccaccccagcccatgaagggctccgccactga 6750166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 338 - 384
Target Start/End: Complemental strand, 38527218 - 38527172
Alignment:
Q  338 cgggtgggccgtggctcacctgagcccatgaagggctccgcctctga 384  Q
    ||||||||||||||| ||||  |||||||||||||||||||| ||||    
T  38527218 cgggtgggccgtggcccaccccagcccatgaagggctccgccactga 38527172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 338 - 379
Target Start/End: Complemental strand, 34983320 - 34983279
Alignment:
Q  338 cgggtgggccgtggctcacctgagcccatgaagggctccgcc 379  Q
    ||||||||||||||| ||||  ||||||||||||||||||||    
T  34983320 cgggtgggccgtggcccaccccagcccatgaagggctccgcc 34983279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 396 - 428
Target Start/End: Complemental strand, 5732762 - 5732730
Alignment:
Q  396 ccacaaataattttatatcattacatttcaaca 428  Q
    |||||||||||| ||||||||||||||||||||    
T  5732762 ccacaaataattctatatcattacatttcaaca 5732730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 396 - 428
Target Start/End: Original strand, 9032589 - 9032621
Alignment:
Q  396 ccacaaataattttatatcattacatttcaaca 428  Q
    |||||||||||||||||||||||| ||||||||    
T  9032589 ccacaaataattttatatcattacgtttcaaca 9032621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 339 - 379
Target Start/End: Original strand, 28745609 - 28745649
Alignment:
Q  339 gggtgggccgtggctcacctgagcccatgaagggctccgcc 379  Q
    |||||||||||||| ||||  ||||||||||||||||||||    
T  28745609 gggtgggccgtggcccaccccagcccatgaagggctccgcc 28745649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 339 - 379
Target Start/End: Original strand, 36436297 - 36436337
Alignment:
Q  339 gggtgggccgtggctcacctgagcccatgaagggctccgcc 379  Q
    |||||||||||||| ||||  ||||||||||||||||||||    
T  36436297 gggtgggccgtggcccaccccagcccatgaagggctccgcc 36436337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 400 - 428
Target Start/End: Complemental strand, 43652679 - 43652651
Alignment:
Q  400 aaataattttatatcattacatttcaaca 428  Q
    |||||||||||||||||||||||||||||    
T  43652679 aaataattttatatcattacatttcaaca 43652651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 89; Significance: 1e-42; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 10 - 205
Target Start/End: Original strand, 25303672 - 25303868
Alignment:
Q  10 tacagatgttaattgaaacaagttttagttgagagacaatgtaagggaggtttgaaacccaccacaaattagaaggcttgtaaacctccgctaaccagcc 109  Q
    |||| ||||||||||||| |||||||| || |||||||||||||| |||||||| ||||| | | |||||||||||    || || |  |||||||||||    
T  25303672 tacaaatgttaattgaaataagttttacttaagagacaatgtaagagaggtttggaaccctctataaattagaaggtccttagacatttgctaaccagcc 25303771  T
Q  110 aagcatagacacgacaaaaatcatgtatactacttgtagaactgctgaaatctaaaatcgttgaaaaattgtttaaaatctcac-aaattgatctat 205  Q
    || ||||||||||||||||||||||||||||||||||  ||  | |||||||||||| |||||||||||||| ||||||||||| ||||||||||||    
T  25303772 aaacatagacacgacaaaaatcatgtatactacttgtgaaatcgttgaaatctaaaaccgttgaaaaattgtctaaaatctcacaaaattgatctat 25303868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 389 - 428
Target Start/End: Complemental strand, 965442 - 965403
Alignment:
Q  389 atagattccacaaataattttatatcattacatttcaaca 428  Q
    |||| |||||||||||||||||||||||||||||||||||    
T  965442 ataggttccacaaataattttatatcattacatttcaaca 965403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 396 - 428
Target Start/End: Original strand, 1706456 - 1706488
Alignment:
Q  396 ccacaaataattttatatcattacatttcaaca 428  Q
    |||||||||||||||||||||||||||||||||    
T  1706456 ccacaaataattttatatcattacatttcaaca 1706488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 338 - 386
Target Start/End: Complemental strand, 8727766 - 8727718
Alignment:
Q  338 cgggtgggccgtggctcacctgagcccatgaagggctccgcctctgaat 386  Q
    |||||||| |||||| ||||  |||||||||||||||||||||||||||    
T  8727766 cgggtgggtcgtggcccaccctagcccatgaagggctccgcctctgaat 8727718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 389 - 428
Target Start/End: Complemental strand, 33037427 - 33037388
Alignment:
Q  389 atagattccacaaataattttatatcattacatttcaaca 428  Q
    |||| |||||||||||||||||||||||||||||| ||||    
T  33037427 ataggttccacaaataattttatatcattacattttaaca 33037388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 398 - 428
Target Start/End: Complemental strand, 1778831 - 1778801
Alignment:
Q  398 acaaataattttatatcattacatttcaaca 428  Q
    |||||||||||||||||||||||||||||||    
T  1778831 acaaataattttatatcattacatttcaaca 1778801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 398 - 428
Target Start/End: Complemental strand, 12287279 - 12287249
Alignment:
Q  398 acaaataattttatatcattacatttcaaca 428  Q
    |||||||||||||||||||||||||||||||    
T  12287279 acaaataattttatatcattacatttcaaca 12287249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 338 - 388
Target Start/End: Complemental strand, 26873747 - 26873697
Alignment:
Q  338 cgggtgggccgtggctcacctgagcccatgaagggctccgcctctgaatat 388  Q
    ||||||||||||||| ||||  |||||||||||||||||||| ||| ||||    
T  26873747 cgggtgggccgtggcccaccccagcccatgaagggctccgccactgtatat 26873697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 339 - 384
Target Start/End: Complemental strand, 17166909 - 17166864
Alignment:
Q  339 gggtgggccgtggctcacctgagcccatgaagggctccgcctctga 384  Q
    |||||||||||||| ||||  |||||||||||||||||||| ||||    
T  17166909 gggtgggccgtggcccaccccagcccatgaagggctccgccgctga 17166864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 278 - 323
Target Start/End: Original strand, 25303945 - 25303990
Alignment:
Q  278 tcgtaaaattgtttaaaatctcgcagaatatacttataattgttaa 323  Q
    |||||||||||||||||||||| || |||| || ||||||||||||    
T  25303945 tcgtaaaattgtttaaaatctcacataatagacctataattgttaa 25303990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 338 - 379
Target Start/End: Original strand, 44724177 - 44724218
Alignment:
Q  338 cgggtgggccgtggctcacctgagcccatgaagggctccgcc 379  Q
    ||||||||||||||| ||||  ||||||||||||||||||||    
T  44724177 cgggtgggccgtggcccaccccagcccatgaagggctccgcc 44724218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 400 - 428
Target Start/End: Original strand, 26576043 - 26576071
Alignment:
Q  400 aaataattttatatcattacatttcaaca 428  Q
    |||||||||||||||||||||||||||||    
T  26576043 aaataattttatatcattacatttcaaca 26576071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 156 - 196
Target Start/End: Complemental strand, 40883513 - 40883473
Alignment:
Q  156 gaaatctaaaatcgttgaaaaattgtttaaaatctcacaaa 196  Q
    |||| |||||||||||||||||||||||||| |||| ||||    
T  40883513 gaaaactaaaatcgttgaaaaattgtttaaagtctcgcaaa 40883473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 400 - 428
Target Start/End: Original strand, 41966164 - 41966192
Alignment:
Q  400 aaataattttatatcattacatttcaaca 428  Q
    |||||||||||||||||||||||||||||    
T  41966164 aaataattttatatcattacatttcaaca 41966192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 58; Significance: 3e-24; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 15 - 136
Target Start/End: Complemental strand, 41700976 - 41700855
Alignment:
Q  15 atgttaattgaaacaagttttagttgagagacaatgtaagggaggtttgaaacccaccacaaattagaaggcttgtaaacctccgctaaccagccaagca 114  Q
    ||||| |||| ||||| ||| |||||| | ||||| |||||||||||||||||||  ||||||||||||||  |||||||||||| ||||||||||| ||    
T  41700976 atgttgattggaacaattttaagttgacaaacaatataagggaggtttgaaacccctcacaaattagaaggtctgtaaacctccgttaaccagccaaaca 41700877  T
Q  115 tagacacgacaaaaatcatgta 136  Q
    || ||| ||||||||| |||||    
T  41700876 tatacatgacaaaaattatgta 41700855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 15 - 137
Target Start/End: Original strand, 26682881 - 26683002
Alignment:
Q  15 atgttaattgaaacaagttttagttgagagacaatgtaagggaggtttgaaacccaccacaaattagaaggcttgtaaacctccgctaaccagccaagca 114  Q
    |||||||||||||||| |||||||| | | ||||| ||| ||||||||||||||| |||||||||||||||  ||||| ||||||||||| || ||||||    
T  26682881 atgttaattgaaacaatttttagttaacatacaatataaaggaggtttgaaaccc-ccacaaattagaaggtatgtaatcctccgctaactagtcaagca 26682979  T
Q  115 tagacacgacaaaaatcatgtat 137  Q
    |||||| || ||| |||| ||||    
T  26682980 tagacatgaaaaatatcacgtat 26683002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 15 - 188
Target Start/End: Original strand, 36243966 - 36244137
Alignment:
Q  15 atgttaattgaaacaagttttagttgagagacaatgtaagggaggtttgaaacccaccacaaattagaaggcttgtaaacctccgctaaccagccaagca 114  Q
    |||||||||| ||||| |||||||||| | | ||| ||| |||| |||||||| | |||||||||||||||  | | |   |||||||||||| ||||||    
T  36243966 atgttaattggaacaaattttagttgacataaaatataaaggagatttgaaacgccccacaaattagaaggtctctgat--tccgctaaccagtcaagca 36244063  T
Q  115 tagacacgacaaaaatcatgtatactacttgtagaactgctgaaatctaaaatcgttgaaaaattgtttaaaat 188  Q
    ||| |  ||||||||||| |||| | || | | |||  || ||||| ||||| |||||||||||||||||||||    
T  36244064 taggcgtgacaaaaatcacgtatgccacctatggaatcgccgaaatttaaaaccgttgaaaaattgtttaaaat 36244137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 338 - 391
Target Start/End: Original strand, 9737820 - 9737873
Alignment:
Q  338 cgggtgggccgtggctcacctgagcccatgaagggctccgcctctgaatatata 391  Q
    ||||||||||||||| ||||  |||||||||||||||||||| |||||||||||    
T  9737820 cgggtgggccgtggcccaccccagcccatgaagggctccgccactgaatatata 9737873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 9 - 84
Target Start/End: Complemental strand, 42141331 - 42141257
Alignment:
Q  9 atacagatgttaattgaaacaagttttagttgagagacaatgtaagggaggtttgaaacccaccacaaattagaag 84  Q
    ||||| |||||||||| ||||| ||| |||||  | ||||| ||||||||||||||||||| ||||||||||||||    
T  42141331 atacaaatgttaattggaacaattttcagttgccaaacaatataagggaggtttgaaaccc-ccacaaattagaag 42141257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 71 - 196
Target Start/End: Complemental strand, 5930144 - 5930020
Alignment:
Q  71 ccacaaattagaaggcttgtaaacctccgctaaccagccaagcatagacacgacaaaaatcatgtatactacttgtagaactgctgaaatctaaaatcgt 170  Q
    ||||||||||||||  | ||||||||| ||||| |||| ||| |||  || ||||||||||| ||||   |||| |  ||||||||||| |||||||| |    
T  5930144 ccacaaattagaaga-tcgtaaacctctgctaatcagctaagtataagcatgacaaaaatcacgtatgtcacttttgaaactgctgaaaactaaaatctt 5930046  T
Q  171 tgaaaaattgtttaaaatctcacaaa 196  Q
    ||  ||||||||||||||||| ||||    
T  5930045 tggcaaattgtttaaaatctcgcaaa 5930020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 338 - 379
Target Start/End: Original strand, 19577293 - 19577334
Alignment:
Q  338 cgggtgggccgtggctcacctgagcccatgaagggctccgcc 379  Q
    ||||||||||||||| ||||| ||||||||||||||||||||    
T  19577293 cgggtgggccgtggcccaccttagcccatgaagggctccgcc 19577334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 338 - 379
Target Start/End: Complemental strand, 26784956 - 26784915
Alignment:
Q  338 cgggtgggccgtggctcacctgagcccatgaagggctccgcc 379  Q
    ||||||||||||||| ||||| ||||||||||||||||||||    
T  26784956 cgggtgggccgtggcccacctaagcccatgaagggctccgcc 26784915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 338 - 379
Target Start/End: Complemental strand, 43358454 - 43358413
Alignment:
Q  338 cgggtgggccgtggctcacctgagcccatgaagggctccgcc 379  Q
    ||||||||||||||| ||||| ||||||||||||||||||||    
T  43358454 cgggtgggccgtggcccacctcagcccatgaagggctccgcc 43358413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 398 - 428
Target Start/End: Complemental strand, 23419054 - 23419024
Alignment:
Q  398 acaaataattttatatcattacatttcaaca 428  Q
    |||||||||||||||||||||||||||||||    
T  23419054 acaaataattttatatcattacatttcaaca 23419024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 398 - 428
Target Start/End: Original strand, 35377844 - 35377874
Alignment:
Q  398 acaaataattttatatcattacatttcaaca 428  Q
    |||||||||||||||||||||||||||||||    
T  35377844 acaaataattttatatcattacatttcaaca 35377874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 338 - 379
Target Start/End: Complemental strand, 3631303 - 3631262
Alignment:
Q  338 cgggtgggccgtggctcacctgagcccatgaagggctccgcc 379  Q
    ||||||||||||||| ||||  ||||||||||||||||||||    
T  3631303 cgggtgggccgtggcccaccccagcccatgaagggctccgcc 3631262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 338 - 379
Target Start/End: Original strand, 13013368 - 13013409
Alignment:
Q  338 cgggtgggccgtggctcacctgagcccatgaagggctccgcc 379  Q
    ||||||||||||||| ||||  ||||||||||||||||||||    
T  13013368 cgggtgggccgtggcccaccccagcccatgaagggctccgcc 13013409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 399 - 428
Target Start/End: Complemental strand, 19279629 - 19279600
Alignment:
Q  399 caaataattttatatcattacatttcaaca 428  Q
    ||||||||||||||||||||||||||||||    
T  19279629 caaataattttatatcattacatttcaaca 19279600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 341 - 386
Target Start/End: Original strand, 20071329 - 20071374
Alignment:
Q  341 gtgggccgtggctcacctgagcccatgaagggctccgcctctgaat 386  Q
    |||||||||| | ||||  |||||||||||||||||||||||||||    
T  20071329 gtgggccgtgacccaccctagcccatgaagggctccgcctctgaat 20071374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 338 - 379
Target Start/End: Original strand, 26525343 - 26525384
Alignment:
Q  338 cgggtgggccgtggctcacctgagcccatgaagggctccgcc 379  Q
    ||||||||||||||| ||||  ||||||||||||||||||||    
T  26525343 cgggtgggccgtggcccaccccagcccatgaagggctccgcc 26525384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 398 - 426
Target Start/End: Original strand, 6783516 - 6783544
Alignment:
Q  398 acaaataattttatatcattacatttcaa 426  Q
    |||||||||||||||||||||||||||||    
T  6783516 acaaataattttatatcattacatttcaa 6783544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 396 - 428
Target Start/End: Complemental strand, 27903752 - 27903720
Alignment:
Q  396 ccacaaataattttatatcattacatttcaaca 428  Q
    |||||||||||||||||||||||||||| ||||    
T  27903752 ccacaaataattttatatcattacattttaaca 27903720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 123 - 191
Target Start/End: Original strand, 33672 - 33740
Alignment:
Q  123 acaaaaatcatgtatactacttgtagaactgctgaaatctaaaatcgttgaaaaattgtttaaaatctc 191  Q
    |||||||||| |||| | |||| ||||||||  |||| |||||| ||||||||||||||||||||||||    
T  33672 acaaaaatcacgtatgccacttttagaactggcgaaaactaaaaccgttgaaaaattgtttaaaatctc 33740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0069 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 396 - 428
Target Start/End: Original strand, 60924 - 60956
Alignment:
Q  396 ccacaaataattttatatcattacatttcaaca 428  Q
    |||||||||||||||||||||||||||||||||    
T  60924 ccacaaataattttatatcattacatttcaaca 60956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 398 - 428
Target Start/End: Original strand, 94229 - 94259
Alignment:
Q  398 acaaataattttatatcattacatttcaaca 428  Q
    |||||||||||||||||||||||||||||||    
T  94229 acaaataattttatatcattacatttcaaca 94259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 338 - 384
Target Start/End: Complemental strand, 64978 - 64932
Alignment:
Q  338 cgggtgggccgtggctcacctgagcccatgaagggctccgcctctga 384  Q
    ||||||||||||||| ||||  |||||||||||||||||||| ||||    
T  64978 cgggtgggccgtggcccaccccagcccatgaagggctccgccactga 64932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 338 - 379
Target Start/End: Complemental strand, 19090 - 19049
Alignment:
Q  338 cgggtgggccgtggctcacctgagcccatgaagggctccgcc 379  Q
    ||||||||||||||| ||||  ||||||||||||||||||||    
T  19090 cgggtgggccgtggcccaccccagcccatgaagggctccgcc 19049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 341 - 386
Target Start/End: Original strand, 303934 - 303979
Alignment:
Q  341 gtgggccgtggctcacctgagcccatgaagggctccgcctctgaat 386  Q
    |||||||||| | ||||  |||||||||||||||||||||||||||    
T  303934 gtgggccgtgacccaccctagcccatgaagggctccgcctctgaat 303979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1940 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold1940
Description:

Target: scaffold1940; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 396 - 428
Target Start/End: Complemental strand, 737 - 705
Alignment:
Q  396 ccacaaataattttatatcattacatttcaaca 428  Q
    |||||||||||||||||||||||||||| ||||    
T  737 ccacaaataattttatatcattacattttaaca 705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0131 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0131
Description:

Target: scaffold0131; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 339 - 379
Target Start/End: Complemental strand, 11210 - 11170
Alignment:
Q  339 gggtgggccgtggctcacctgagcccatgaagggctccgcc 379  Q
    |||||||||||||| ||||  ||||||||||||||||||||    
T  11210 gggtgggccgtggcccaccccagcccatgaagggctccgcc 11170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 156 - 196
Target Start/End: Original strand, 82771 - 82811
Alignment:
Q  156 gaaatctaaaatcgttgaaaaattgtttaaaatctcacaaa 196  Q
    |||| |||||||||||||||||||||||||| |||| ||||    
T  82771 gaaaactaaaatcgttgaaaaattgtttaaagtctcgcaaa 82811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University