View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7831_low_8 (Length: 415)

Name: NF7831_low_8
Description: NF7831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7831_low_8
NF7831_low_8
[»] chr1 (11 HSPs)
chr1 (13-228)||(26454346-26454561)
chr1 (228-395)||(26454105-26454272)
chr1 (13-156)||(26446240-26446386)
chr1 (13-111)||(26449129-26449227)
chr1 (229-309)||(26445968-26446048)
chr1 (164-228)||(26449431-26449495)
chr1 (154-228)||(26446122-26446196)
chr1 (354-389)||(26445977-26446012)
chr1 (270-307)||(26445897-26445934)
chr1 (345-395)||(26445853-26445907)
chr1 (345-389)||(26445904-26445948)
[»] chr8 (2 HSPs)
chr8 (20-105)||(29673360-29673445)
chr8 (228-272)||(29673165-29673209)


Alignment Details
Target: chr1 (Bit Score: 180; Significance: 4e-97; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 13 - 228
Target Start/End: Complemental strand, 26454561 - 26454346
Alignment:
Q  13 atggacatcagacacgacactaactcgtagaaaaccctaataatttaagaaaatataagcgatcaaatgtacaccaacatggatcatacacaacactgac 112  Q
    |||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| | |||||||    
T  26454561 atggacttcagacacgagactaactcgtagaaaaccctaataatttaagaaaatataagcgatcaaatatacaccaacatggatcagacatagcactgac 26454462  T
Q  113 tcaaaaccacttcgatcgatctgatcttaaatatattgaagaacgcccaggttaaagaaaattgtcgaatgtgaaattgaaaaagatcatacctttgcct 212  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  26454461 acaaaaccacttcgatcgatctgatcttaaatatattgaagaacgcccaggttaaagaaaattgtcgaaagtgaaattgaaaaagatcatacctttgcct 26454362  T
Q  213 gttgagttattggtta 228  Q
    ||| ||||||||||||    
T  26454361 gtttagttattggtta 26454346  T

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Target: chr1; HSP #2
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 228 - 395
Target Start/End: Complemental strand, 26454272 - 26454105
Alignment:
Q  228 aggacaaagaaacaaaacaacacggctaggtattcggttttggtaaaacatacaacttacacactatttattgagtgattctgtagggaccactatttta 327  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26454272 aggataaagaaacaaaacaacacggctaggtattcggttttggtaaaacatacaacttacacactatttattgagtgattctgtagggaccactatttta 26454173  T
Q  328 aaacatacaacttgcacattgagtgattttggtaaaacatgcaacttgcacactatttattggtaaaa 395  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26454172 aaacatacaacttgcacattgagtgattttggtaaaacatgcaacttgcacactatttattggtaaaa 26454105  T

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Target: chr1; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 13 - 156
Target Start/End: Complemental strand, 26446386 - 26446240
Alignment:
Q  13 atggacatcagacacgacacta--actcgtagaaaaccctaataatttaagaaaatataagcgatcaaatgtacaccaacatggatcatacacaacactg 110  Q
    |||||| |||||||| ||||||  | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||    
T  26446386 atggacttcagacacaacactataaatcgtagaaaaccctaataatttaagaaaatataagcgatcaaatgtacaccaacatggatcagacacaacattg 26446287  T
Q  111 actca-aaaccacttcgatcgatctgatcttaaatatattgaagaac 156  Q
    | ||| | |||||||| ||||||||||||||||||||||| ||||||    
T  26446286 attcagacaccacttcaatcgatctgatcttaaatatattaaagaac 26446240  T

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Target: chr1; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 13 - 111
Target Start/End: Original strand, 26449129 - 26449227
Alignment:
Q  13 atggacatcagacacgacactaactcgtagaaaaccctaataatttaagaaaatataagcgatcaaatgtacaccaacatggatcatacacaacactga 111  Q
    |||||| |||||||| |||||||||| |||| ||||||||||||||||||||||||||| |||| ||||||||||||||||||| | | ||||||||||    
T  26449129 atggacgtcagacacaacactaactcatagacaaccctaataatttaagaaaatataagagatctaatgtacaccaacatggattagatacaacactga 26449227  T

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Target: chr1; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 229 - 309
Target Start/End: Complemental strand, 26446048 - 26445968
Alignment:
Q  229 ggacaaagaaacaaaacaacacggctaggtattcggttttggtaaaacatacaacttacacactatttattgagtgattct 309  Q
    |||||||||||||||| | || || |||||||| ||||||||||||||||||||||| |||||||||||||||||||||||    
T  26446048 ggacaaagaaacaaaatagcatggttaggtattaggttttggtaaaacatacaacttgcacactatttattgagtgattct 26445968  T

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Target: chr1; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 164 - 228
Target Start/End: Original strand, 26449431 - 26449495
Alignment:
Q  164 ttaaagaaaattgtcgaatgtgaaattgaaaaagatcatacctttgcctgttgagttattggtta 228  Q
    |||||||||||||||||| |||||| ||||||||||||| | |||| ||||||||||||||||||    
T  26449431 ttaaagaaaattgtcgaaagtgaaaatgaaaaagatcatgcatttgtctgttgagttattggtta 26449495  T

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Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 154 - 228
Target Start/End: Complemental strand, 26446196 - 26446122
Alignment:
Q  154 aacgcccaggttaaagaaaattgtcgaatgtgaaattgaaaaagatcatacctttgcctgttgagttattggtta 228  Q
    |||| |||| ||||| |||||||||||| ||||||||||||| ||||||||||||| | |||||||  |||||||    
T  26446196 aacggccagattaaataaaattgtcgaaagtgaaattgaaaaggatcatacctttgtcagttgagtggttggtta 26446122  T

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Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 354 - 389
Target Start/End: Complemental strand, 26446012 - 26445977
Alignment:
Q  354 ttttggtaaaacatgcaacttgcacactatttattg 389  Q
    |||||||||||||| |||||||||||||||||||||    
T  26446012 ttttggtaaaacatacaacttgcacactatttattg 26445977  T

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Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 270 - 307
Target Start/End: Complemental strand, 26445934 - 26445897
Alignment:
Q  270 gtaaaacatacaacttacacactatttattgagtgatt 307  Q
    |||||||||||||||| ||||||||| |||||||||||    
T  26445934 gtaaaacatacaacttgcacactattgattgagtgatt 26445897  T

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Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 345 - 395
Target Start/End: Complemental strand, 26445907 - 26445853
Alignment:
Q  345 attgagtgattttggt-aaaacatgcaacttgcacact---atttattggtaaaa 395  Q
    |||||||||||||||| |||||||||||| ||||||||   ||||||||||||||    
T  26445907 attgagtgattttggtaaaaacatgcaacctgcacactctaatttattggtaaaa 26445853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 345 - 389
Target Start/End: Complemental strand, 26445948 - 26445904
Alignment:
Q  345 attgagtgattttggtaaaacatgcaacttgcacactatttattg 389  Q
    ||||||||||| | ||||||||| |||||||||||||||| ||||    
T  26445948 attgagtgattcttgtaaaacatacaacttgcacactattgattg 26445904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 70; Significance: 2e-31; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 20 - 105
Target Start/End: Complemental strand, 29673445 - 29673360
Alignment:
Q  20 tcagacacgacactaactcgtagaaaaccctaataatttaagaaaatataagcgatcaaatgtacaccaacatggatcatacacaa 105  Q
    |||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||    
T  29673445 tcagacacaacactaactcgtagacaaccctaataatttaagaaaatataagcgatcaaatgtacaccaacatgtatcagacacaa 29673360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 228 - 272
Target Start/End: Complemental strand, 29673209 - 29673165
Alignment:
Q  228 aggacaaagaaacaaaacaacacggctaggtattcggttttggta 272  Q
    |||||||||||||||||||||||| ||||| ||| ||||||||||    
T  29673209 aggacaaagaaacaaaacaacacgactaggaattaggttttggta 29673165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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