View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7832_high_13 (Length: 465)
Name: NF7832_high_13
Description: NF7832
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7832_high_13 |
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Alignment Details
Target: chr2 (Bit Score: 332; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 94 - 449
Target Start/End: Original strand, 386270 - 386624
Alignment:
| Q |
94 |
tagtatgcaagaatgaaaaatatatcttgtaaatgagtttcatacgtgttctttcaacatttctagttagagcattatctcgttgaaagtcaaaatgtat |
193 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
386270 |
tagtatgcaagaatgaaaaatatatcttgtaaatgagtttcatacgtgttctttcaacatttctagttagagcattatctcgttgaaagtcaaaatgtat |
386369 |
T |
|
| Q |
194 |
caaagaagccacaaattatcatctaaggtaactactatcctcgctcgaagtattcaaataatcaaaacttggaaaaagttccaccttgaagatttctcaa |
293 |
Q |
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| T |
386370 |
caaagaagccacaaattatcatctaaggttactactatcctcgctcgaagtattcaaataatcaaaacttgtaaaaagttcca-cttgaagatttctcaa |
386468 |
T |
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| Q |
294 |
gaagattcaacaacaacaattatctgtccaaaagtgtcaaagattcaaattaaaaagaaagccgtacgccgactcatgcctgaaataggaactcaagaat |
393 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
386469 |
gaagattcaacaacaataattatctgtccaaaagtgtcaaagattcaaattaaaaagaaagccgtacgccgactcatgcctgaaataggaactcaagaat |
386568 |
T |
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| Q |
394 |
acaacgaacttgtggaaaatcctcacaaggcttttttaaaaacaattacttcacag |
449 |
Q |
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| T |
386569 |
acaacgaacttgaggaaaatcctcacaaggcttttttaaaaacaattacttcacag |
386624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 386163 - 386245
Alignment:
| Q |
1 |
ggatcataatattgcccttctggtgagtttttagttgacaggtttacatgtatgtaacttacaaatcgatgaaacatgtgggttgttttaatatagta |
98 |
Q |
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| T |
386163 |
ggatcataatattgcccttctggtgagtttttagttgacaggtttac---------------aaatcgatgaaacatgtgggttgttttaatatagta |
386245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 363 - 449
Target Start/End: Original strand, 36926447 - 36926533
Alignment:
| Q |
363 |
cgactcatgcctgaaataggaactcaagaatacaacgaacttgtggaaaatcctcacaaggcttttttaaaaacaattacttcacag |
449 |
Q |
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|||||||||||||||| |||||||||||| ||||| |||||| ||||||||||| |||| |||||| | |||||||| ||||||||| |
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| T |
36926447 |
cgactcatgcctgaaaaaggaactcaagagtacaatgaacttttggaaaatcctgacaaagcttttctgaaaacaatcacttcacag |
36926533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 364 - 449
Target Start/End: Complemental strand, 49608358 - 49608273
Alignment:
| Q |
364 |
gactcatgcctgaaataggaactcaagaatacaacgaacttgtggaaaatcctcacaaggcttttttaaaaacaattacttcacag |
449 |
Q |
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||||||||||||||| | | |||||||||||||| ||||||||||||||||| ||||| ||||||| || ||||||||||||||| |
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| T |
49608358 |
gactcatgcctgaaaaaaggactcaagaatacaatcaacttgtggaaaatcctgacaagccttttttgaagacaattacttcacag |
49608273 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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