View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7832_high_18 (Length: 399)

Name: NF7832_high_18
Description: NF7832
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7832_high_18
NF7832_high_18
[»] chr6 (2 HSPs)
chr6 (1-298)||(25520836-25521133)
chr6 (344-381)||(25520753-25520790)
[»] chr3 (1 HSPs)
chr3 (1-297)||(8524947-8525252)
[»] chr5 (11 HSPs)
chr5 (1-223)||(41711675-41711897)
chr5 (1-235)||(42125492-42125726)
chr5 (1-212)||(42130717-42130928)
chr5 (19-226)||(34230688-34230895)
chr5 (19-226)||(34238743-34238950)
chr5 (19-204)||(41569924-41570109)
chr5 (244-289)||(42119134-42119179)
chr5 (34-102)||(41433422-41433490)
chr5 (34-177)||(41446146-41446289)
chr5 (244-294)||(34230632-34230682)
chr5 (244-294)||(34238687-34238737)
[»] chr4 (1 HSPs)
chr4 (1-202)||(11120266-11120467)
[»] chr2 (1 HSPs)
chr2 (19-204)||(12250331-12250516)


Alignment Details
Target: chr6 (Bit Score: 258; Significance: 1e-143; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 1 - 298
Target Start/End: Complemental strand, 25521133 - 25520836
Alignment:
Q  1 atgaaaatgagagccagtgaaatcattgtaagaaaggttgagttttttaatatgagcaagatgaaaaagtgtactattaggatgaaatataccttgaagg 100  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| |||||||||||||| ||||||||||| |||    
T  25521133 atgaaaatgggagccagtgaaatcattgtaagaaaggttgagtttttgaatatgagcaagatggaaaagagtactattaggatggaatataccttggagg 25521034  T
Q  101 ccttcacagccaaggttgaggccaatcacgcgaccaaaagtggcgtcgcatgtgacaccatgccatgagcagcaatcagtctcatatttccatgttgttg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||    
T  25521033 ccttcacagccaaggttgaggccaatcacgcgaccaaaagtggtgtcgcatgtgacaccatgccatgagcagcaatcagtcccatatttccatgttgctg 25520934  T
Q  201 tttttagaagagattcatcacaaggataagaagattcagaatttatagtgaaggaggatttaaactgaagcagagcagagctctcatcacgatggcat 298  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25520933 ttttcagaagagattcatcacaaggataagaagattcagaatttatagtgaaggaggatttaaactgaagcagagcagagctctcatcacgatggcat 25520836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 344 - 381
Target Start/End: Complemental strand, 25520790 - 25520753
Alignment:
Q  344 tgcaataacagaagcaaccatgccatgaatgaatgatt 381  Q
    |||||||| |||||||||||||||||||||||||||||    
T  25520790 tgcaataaaagaagcaaccatgccatgaatgaatgatt 25520753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 117; Significance: 2e-59; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 1 - 297
Target Start/End: Original strand, 8524947 - 8525252
Alignment:
Q  1 atgaaaatgagagccagtgaaatcattgtaagaaaggttgagttttttaatatgagcaagatgaaaaagtgtactattaggatgaaatataccttgaagg 100  Q
    |||||||| |||||||| ||||||||||| || |||||||||||||| ||||| ||||||||| ||||| ||||| |||||||  | ||| ||||||||     
T  8524947 atgaaaataagagccagagaaatcattgttagcaaggttgagtttttgaatataagcaagatggaaaagggtactgttaggattgagtatgccttgaaga 8525046  T
Q  101 ccttcacagccaaggttgaggccaatcacgcgaccaaaagtggcgtcgcatgtgacaccatgccatgagcagcaatcagtctcatatttccatgttgttg 200  Q
    |||||||||||||||||||||||||||||| |||||    ||| ||| || |||||||||| |||||||||||||||| |||||| ||||||||||| ||    
T  8525047 ccttcacagccaaggttgaggccaatcacgtgaccactgatggtgtcacacgtgacaccatcccatgagcagcaatcaatctcatttttccatgttgctg 8525146  T
Q  201 tttt---tagaagagattcatcac------aaggataagaagattcagaatttatagtgaaggaggatttaaactgaagcagagcagagctctcatcacg 291  Q
    ||||    ||| ||||||||||||      ||| ||||| || ||||||||||||||||||||| || || || ||||||| |||||||||||||| | |    
T  8525147 ttttcaaaagacgagattcatcacaaaaataagaataagcaggttcagaatttatagtgaaggatgacttgaaatgaagcaaagcagagctctcataatg 8525246  T
Q  292 atggca 297  Q
    ||||||    
T  8525247 atggca 8525252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 115; Significance: 3e-58; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 41711897 - 41711675
Alignment:
Q  1 atgaaaatgagagccagtgaaatcattgtaagaaaggttgagttttttaatatgagcaagatgaaaaagtgtactattaggatgaaatataccttgaagg 100  Q
    ||||||||| |||  || ||||||||||||||||||||||||| |||  | |||| ||||||| ||||| ||| |||||||||| |||||||||||||||    
T  41711897 atgaaaatgggagtaagagaaatcattgtaagaaaggttgagtgtttggagatgaacaagatggaaaagagtattattaggatggaatataccttgaagg 41711798  T
Q  101 ccttcacagccaaggttgaggccaatcacgcgaccaaaagtggcgtcgcatgtgacaccatgccatgagcagcaatcagtctcatatttccatgttgttg 200  Q
    || |||||||||||||||||||||| |||||||||| |   || ||| |||||||||||  |||||||||| ||||||||||||| ||||||||||||||    
T  41711797 ccatcacagccaaggttgaggccaaccacgcgaccatagacggtgtcacatgtgacaccgggccatgagcaacaatcagtctcatttttccatgttgttg 41711698  T
Q  201 tttttagaagagattcatcacaa 223  Q
    |||||||||||| |||| |||||    
T  41711697 tttttagaagaggttcaccacaa 41711675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 42125492 - 42125726
Alignment:
Q  1 atgaaaatgagagccagtgaaatcattgtaagaaaggttgagttttttaatatgagcaagatgaaaaagtgtactattaggatgaaatataccttgaagg 100  Q
    |||||||||||||  || ||||||||||| ||||||||||||| ||| || |||| ||||||  ||||| ||||| |||||||| | | |||||||||||    
T  42125492 atgaaaatgagagtaagagaaatcattgttagaaaggttgagtgtttgaagatgaacaagattgaaaagggtactgttaggatgtagtttaccttgaagg 42125591  T
Q  101 ccttcacagccaaggttgaggccaatcacgcgaccaaaagtggcgtcgcatgtgacaccatgccatgagcagcaatcagtctcatatttccatgttgttg 200  Q
    |||||||||||||| ||||||||||||||| ||| |    |||  || || |||||||||| ||||||||||||||||||| ||| ||||||||||| ||    
T  42125592 ccttcacagccaagattgaggccaatcacgtgacgagtgatggtatcacacgtgacaccattccatgagcagcaatcagtcccatttttccatgttgctg 42125691  T
Q  201 tttttagaagagattcatcacaaggataagaagat 235  Q
    |||| ||||||||| ||||||||| |||| |||||    
T  42125692 ttttcagaagagatccatcacaagaataaaaagat 42125726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 42130717 - 42130928
Alignment:
Q  1 atgaaaatgagagccagtgaaatcattgtaagaaaggttgagttttttaatatgagcaagatgaaaaagtgtactattaggatgaaatataccttgaagg 100  Q
    ||||||||||||| ||  ||||||||||||||||||||||||| |||  | |||| ||||||||||||| |||||||||||||  ||| |||||  ||||    
T  42130717 atgaaaatgagagtcaaagaaatcattgtaagaaaggttgagtgtttggagatgaacaagatgaaaaagggtactattaggattgaatgtacctgtaagg 42130816  T
Q  101 ccttcacagccaaggttgaggccaatcacgcgaccaaaagtggcgtcgcatgtgacaccatgccatgagcagcaatcagtctcatatttccatgttgttg 200  Q
    ||||||||||||||||||||| |||||||| ||||| |    | ||| || ||||| |||| ||||||||||||||||||| ||| ||||||||||| ||    
T  42130817 ccttcacagccaaggttgaggtcaatcacgtgaccagagactgtgtcacacgtgacgccattccatgagcagcaatcagtcccatttttccatgttgctg 42130916  T
Q  201 tttttagaagag 212  Q
    |||| |||||||    
T  42130917 ttttaagaagag 42130928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 19 - 226
Target Start/End: Complemental strand, 34230895 - 34230688
Alignment:
Q  19 gaaatcattgtaagaaaggttgagttttttaatatgagcaagatgaaaaagtgtactattaggatgaaatataccttgaaggccttcacagccaaggttg 118  Q
    ||||| |||||  |||||||||||  ||| ||  ||||||||||| ||||| |||||||||||||| | ||||||||||| ||||||||||||||||||     
T  34230895 gaaataattgttcgaaaggttgagcatttgaaggtgagcaagatggaaaagggtactattaggatggagtataccttgaaagccttcacagccaaggtta 34230796  T
Q  119 aggccaatcacgcgaccaaaagtggcgtcgcatgtgacaccatgccatgagcagcaatcagtctcatatttccatgttgttgtttttagaagagattcat 218  Q
    |||||||| ||| ||||| |   || ||| || |||||||||||||||||||||||||||||| ||| ||||||||||| |||||| | | |||||| |     
T  34230795 aggccaatgacgtgaccagatacggtgtcacacgtgacaccatgccatgagcagcaatcagtcccatttttccatgttgctgttttcataggagatttaa 34230696  T
Q  219 cacaagga 226  Q
    ||||||||    
T  34230695 cacaagga 34230688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 19 - 226
Target Start/End: Complemental strand, 34238950 - 34238743
Alignment:
Q  19 gaaatcattgtaagaaaggttgagttttttaatatgagcaagatgaaaaagtgtactattaggatgaaatataccttgaaggccttcacagccaaggttg 118  Q
    |||| |||||| ||||||||||||| |||  | |||| ||| ||  ||||| |||||||||||||| | ||||||||||| ||||||||| ||||||||     
T  34238950 gaaaccattgttagaaaggttgagtgtttggagatgaacaatattgaaaagggtactattaggatggagtataccttgaaagccttcacaaccaaggtta 34238851  T
Q  119 aggccaatcacgcgaccaaaagtggcgtcgcatgtgacaccatgccatgagcagcaatcagtctcatatttccatgttgttgtttttagaagagattcat 218  Q
    |||||||| ||| ||||| |   || ||| || |||||||||||||||||||||||||||||| ||| ||||||||||| |||||| | | |||||| |     
T  34238850 aggccaatgacgtgaccagatacggtgtcacacgtgacaccatgccatgagcagcaatcagtcccatttttccatgttgctgttttcataggagatttaa 34238751  T
Q  219 cacaagga 226  Q
    ||||||||    
T  34238750 cacaagga 34238743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 19 - 204
Target Start/End: Complemental strand, 41570109 - 41569924
Alignment:
Q  19 gaaatcattgtaagaaaggttgagttttttaatatgagcaagatgaaaaagtgtactattaggatgaaatataccttgaaggccttcacagccaaggttg 118  Q
    ||||||||||| |||||||||||||  ||  | |||||||||||||||||| ||  | ||||||| || | |||||||||||| |||||||||||||| |    
T  41570109 gaaatcattgtgagaaaggttgagtgattggagatgagcaagatgaaaaagagtgttgttaggataaattttaccttgaaggcattcacagccaaggtcg 41570010  T
Q  119 aggccaatcacgcgaccaaaagtggcgtcgcatgtgacaccatgccatgagcagcaatcagtctcatatttccatgttgttgtttt 204  Q
    || ||||||||||||||| |    |||||||| ||||||||||||||||| || ||||  ||||||  ||||||||||| ||||||    
T  41570009 agaccaatcacgcgaccagagacagcgtcgcacgtgacaccatgccatgaacaacaatttgtctcaattttccatgttgatgtttt 41569924  T

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Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 244 - 289
Target Start/End: Original strand, 42119134 - 42119179
Alignment:
Q  244 tatagtgaaggaggatttaaactgaagcagagcagagctctcatca 289  Q
    ||||||||||||||| || |||||||||||||||||||||||||||    
T  42119134 tatagtgaaggaggacttgaactgaagcagagcagagctctcatca 42119179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 34 - 102
Target Start/End: Original strand, 41433422 - 41433490
Alignment:
Q  34 aaggttgagttttttaatatgagcaagatgaaaaagtgtactattaggatgaaatataccttgaaggcc 102  Q
    |||||||||| |||  | ||||| |||||||||||||||||| || |||||||  ||||||||||||||    
T  41433422 aaggttgagtgtttggagatgagaaagatgaaaaagtgtactgttgggatgaatcataccttgaaggcc 41433490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 34 - 177
Target Start/End: Original strand, 41446146 - 41446289
Alignment:
Q  34 aaggttgagttttttaatatgagcaagatgaaaaagtgtactattaggatgaaatataccttgaaggccttcacagccaaggttgaggccaatcacgcga 133  Q
    |||||||||| |||  | ||||| |||||||||||||||||| || |||||||  |||||||||||| | |  ||||  ||||  | |||||| ||| ||    
T  41446146 aaggttgagtgtttggagatgagaaagatgaaaaagtgtactgttgggatgaataataccttgaaggtcattgcagctgaggtctaagccaattacgtga 41446245  T
Q  134 ccaaaagtggcgtcgcatgtgacaccatgccatgagcagcaatc 177  Q
    ||| || | | ||| || ||||||||| |||||||||| |||||    
T  41446246 ccagaaattgtgtcacaggtgacaccaagccatgagcaacaatc 41446289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 244 - 294
Target Start/End: Complemental strand, 34230682 - 34230632
Alignment:
Q  244 tatagtgaaggaggatttaaactgaagcagagcagagctctcatcacgatg 294  Q
    ||||||||||||||| || |||||||||| |||| ||||||||||| ||||    
T  34230682 tatagtgaaggaggacttgaactgaagcaaagcaaagctctcatcatgatg 34230632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 244 - 294
Target Start/End: Complemental strand, 34238737 - 34238687
Alignment:
Q  244 tatagtgaaggaggatttaaactgaagcagagcagagctctcatcacgatg 294  Q
    ||||||||||||||| || |||||||||| |||| ||||||||||| ||||    
T  34238737 tatagtgaaggaggacttgaactgaagcaaagcaaagctctcatcatgatg 34238687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 94; Significance: 9e-46; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 11120266 - 11120467
Alignment:
Q  1 atgaaaatgagagccagtgaaatcattgtaagaaaggttgagttttttaatatgagcaagatgaaaaagtgtactattaggatgaaatataccttgaagg 100  Q
    ||||||| ||||||| | ||||| ||||||   |||||||||| |||  | |||| ||||||| ||||| |||||||| ||||| ||||| ||||||||     
T  11120266 atgaaaacgagagccggagaaattattgtatacaaggttgagtgtttggagatgaacaagatggaaaagggtactattcggatgtaatatgccttgaaga 11120365  T
Q  101 ccttcacagccaaggttgaggccaatcacgcgaccaaaagtggcgtcgcatgtgacaccatgccatgagcagcaatcagtctcatatttccatgttgttg 200  Q
    |||||||||||||| ||||||||||||||||||||| |  ||| |||||| |||||||||| ||||||||||||||||||| ||| ||||||||||||||    
T  11120366 ccttcacagccaagattgaggccaatcacgcgaccagagatggtgtcgcacgtgacaccattccatgagcagcaatcagtcccatttttccatgttgttg 11120465  T
Q  201 tt 202  Q
    ||    
T  11120466 tt 11120467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 78; Significance: 3e-36; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 19 - 204
Target Start/End: Original strand, 12250331 - 12250516
Alignment:
Q  19 gaaatcattgtaagaaaggttgagttttttaatatgagcaagatgaaaaagtgtactattaggatgaaatataccttgaaggccttcacagccaaggttg 118  Q
    |||||||||| |||||||||||||| |||  | |||||||||||  ||||| ||||||||||| || |||||||| | ||||||||||  |||||||| |    
T  12250331 gaaatcattggaagaaaggttgagtgtttggagatgagcaagatcgaaaagggtactattaggttgtaatataccatcaaggccttcatcgccaaggtcg 12250430  T
Q  119 aggccaatcacgcgaccaaaagtggcgtcgcatgtgacaccatgccatgagcagcaatcagtctcatatttccatgttgttgtttt 204  Q
    |||||||||||  ||||| |  | | ||| ||||||||||||||||||||||||||||||||| ||| || |||||||| ||||||    
T  12250431 aggccaatcacatgaccatagattgtgtcacatgtgacaccatgccatgagcagcaatcagtcccattttgccatgttgctgtttt 12250516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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