View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7832_high_19 (Length: 380)
Name: NF7832_high_19
Description: NF7832
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7832_high_19 |
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Alignment Details
Target: chr2 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 1 - 364
Target Start/End: Original strand, 41783427 - 41783790
Alignment:
| Q |
1 |
ttctttcttaagtttcttttccaattccaaccctaaactgatacatattgtgtgttgcaaatcattattggcacccataa-----ttatcactttgtttt |
95 |
Q |
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| T |
41783427 |
ttctttcttaagtctcttttccaattccaaccctaaactgatacatattgtgtgttgcaaatcattattggcacccataacataattatcactttgtttt |
41783526 |
T |
|
| Q |
96 |
catgatccaattaaattaaattaattgtttattgtagtatagtagtagattgttctgctataattgcaaaactatctatagttactttgtttgttccttt |
195 |
Q |
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|||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41783527 |
catgatccaatt-----aaattaattgtttattatagtatagtagtagattgttctgctataattgcaaaactatctatagttactttgtttgttccttt |
41783621 |
T |
|
| Q |
196 |
tatcatggctgatgataataatatgaaccgtgatgttctctcacttagcaacaacaatcacaccatggttccaacagacgaagatttcatcaccgaatta |
295 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
41783622 |
tatcatggctgatgataataatatgaaccatgatgttctctcacttagcaacaacaatcacaccatggttccaacagacgaagatttcatcaccgagtta |
41783721 |
T |
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| Q |
296 |
actcatcaaatgtctcaattcatgcttcaagaagaagatattgacgactcattcgatttctcatctatt |
364 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41783722 |
actcatcaaatgtctcaattcatgcttcaagaagaagatattgacgactcattcgatttctcatctatt |
41783790 |
T |
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