View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7832_high_2 (Length: 857)
Name: NF7832_high_2
Description: NF7832
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7832_high_2 |
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| [»] scaffold0118 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 660; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 660; E-Value: 0
Query Start/End: Original strand, 18 - 839
Target Start/End: Original strand, 13715140 - 13715952
Alignment:
| Q |
18 |
ccatccaggttaaacttgacccaaccgggcaaggaggggaccaaacaacttcaaaaaacgagtgaggaatagacgcactgcaagaggttttgaacagttg |
117 |
Q |
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| T |
13715140 |
ccatccagattaaacttgacccaaccaggcaaggaggggaccaaacaacttcaaaaaacgagtaaggaatagacgcactgcaagaggttttgaacagttg |
13715239 |
T |
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| Q |
118 |
ggtaacacaaaaatctaccata--gaagatgaaccacgacctttaataagattgcaactaagatgaacttcataaataagcttgtgaaaaaggctttgca |
215 |
Q |
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| T |
13715240 |
ggtaacacaaaagtctaccatatagaagatgaaccacgacctttaataagattgcagctaagatgaacttcataaataagcttgtgaaaaaggctttgca |
13715339 |
T |
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| Q |
216 |
tggaattgttctcattggaaaagcgttgtttgttttgttcaacccaaataatccaaatagtatgaagcttggcagaaagcatgatttgtttcactggagg |
315 |
Q |
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| T |
13715340 |
tggaattgttctcattggaaaagcgttgtctgttttgttcaacccaaataat---------atgaagcttggcagaaagcatgatttgtttcactggagg |
13715430 |
T |
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| Q |
316 |
gctccaaacattctacgagcaatgcagcggaatatcccaagatgataggtcgagaggttgatttatattgttgctgagccaattccaaaattgtgaggtg |
415 |
Q |
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| T |
13715431 |
gctccaaacattctacgagcaatgtagcggaatatcccaagatgataggtcgagaggttgatttatattgttgctgagccaattccaaaattgtgaggtg |
13715530 |
T |
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| Q |
416 |
acagagcaattaaaaataatgtgctcagctgtcatatagcagaagcaacaagcagagaccaaaatacaccctcttattcgtaactggtcattagttagaa |
515 |
Q |
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| T |
13715531 |
acagagcaattaaaaataatgtgctcagctgtcatatagcagaagcaacaaacagagaccaaaatacaccctcttattcgtaactggtcatcagttagaa |
13715630 |
T |
|
| Q |
516 |
gcttatgatgagccaatctccaaacaaatgaaggcccgannnnnnnnnnnnnnnnatgtggggggtggggacaaaggcatttcaaataaacttgcaccaa |
615 |
Q |
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| T |
13715631 |
gcttttgatgagccaatctttaaacaaatgaaggcccga--gtgtgtgtgtgtgtatgtggggggtggggacaaaggcattccaaataaacttgcaccaa |
13715728 |
T |
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| Q |
616 |
ctcaacttgattcgtattcagaaaatcataagctaacttgttggacaaatccccatccatagagtgaagccaatgcaaacagtcattttgaggttcaatg |
715 |
Q |
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| T |
13715729 |
ctcaacttgattcgtattcagaaaatcataagctaacttgttagacaaatccccatccatagagtgaagccaatgcaaacagtcattttgaggttcaatg |
13715828 |
T |
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| Q |
716 |
caaagagtcgtattttgtatcagcaccgtcaaagtaggatatttacggctaatgtatgagggaatctgccattgttggtgcacaatgtaatatgacacct |
815 |
Q |
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| T |
13715829 |
caaagagtggtattttgtatcagcaccgtcaaagtaggatatttagggctaatgtatgagggaatctgccattgttggtgcacgatgtaatatgacacct |
13715928 |
T |
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| Q |
816 |
tcatgttcagctaagcatgcaaat |
839 |
Q |
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| T |
13715929 |
tcatgttcagctaagcatgcaaat |
13715952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0118 (Bit Score: 58; Significance: 6e-24; HSPs: 1)
Name: scaffold0118
Description:
Target: scaffold0118; HSP #1
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 718 - 839
Target Start/End: Original strand, 36099 - 36220
Alignment:
| Q |
718 |
aagagtcgtattttgtatcagcaccgtcaaagtaggatatttacggctaatgtatgagggaatctgccattgttggtgcacaatgtaatatgacaccttc |
817 |
Q |
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| T |
36099 |
aagagtggtattttgtatctgaaccgtcaaggtaggatatttagaactaatgtaggtgggaatccgccattgatggtgcagaatgtaatctgacaccttc |
36198 |
T |
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| Q |
818 |
atgttcagctaagcatgcaaat |
839 |
Q |
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| T |
36199 |
atgtccagctgagcatgaaaat |
36220 |
T |
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