View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7832_high_21 (Length: 363)
Name: NF7832_high_21
Description: NF7832
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7832_high_21 |
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Alignment Details
Target: chr5 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 16 - 326
Target Start/End: Original strand, 42678947 - 42679256
Alignment:
| Q |
16 |
gatcgggccattggtaagtgccatcaagctggatcagacagtttgttgacatcgcagacttttcacaagatggtgaacacatattttatcaacaatgaag |
115 |
Q |
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| T |
42678947 |
gatcgggccattggtaagtgccatcaagctggatccgacagtttgttgacatcgcagacttttcacaagatggtgaacacatattttatcaacaatgaag |
42679046 |
T |
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| Q |
116 |
tcaaaaagcacgctggagtcatatttggattagaagttacagcttgataaagaaaccttgatttgagtttgaattgctacataatacatgataaacattt |
215 |
Q |
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| T |
42679047 |
tcaaaaagcacgctggagtcatatttggattagaagttacagcttgataaagaaaccttgatttgagtttgaattgctacataatacatgataaacattt |
42679146 |
T |
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| Q |
216 |
agtatatgttttaattgtttctgacaatataatatcaacatgcttacnnnnnnnnnnnnatttctcttttaaattaaaattcatatctttgttctggttt |
315 |
Q |
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| T |
42679147 |
agtatatgttttaattgtttctgacaatataatatcaacatgcttac-tttttttttttatttctcttttaaattaaaattcatatctttgttctggttt |
42679245 |
T |
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| Q |
316 |
tgtatagtttc |
326 |
Q |
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||||||||||| |
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| T |
42679246 |
tgtatagtttc |
42679256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 16 - 168
Target Start/End: Complemental strand, 54703800 - 54703648
Alignment:
| Q |
16 |
gatcgggccattggtaagtgccatcaagctggatcagacagtttgttgacatcgcagacttttcacaagatggtgaacacatattttatcaacaatgaag |
115 |
Q |
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|||||||||||||| |||| |||||||||||||| || ||||| || |||| |||||||||||| || || ||| ||||| |||| | ||||||||||| |
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| T |
54703800 |
gatcgggccattggaaagtcacatcaagctggatctgatagtttattaacatggcagacttttcagaaaatagtgcacacacatttcaccaacaatgaag |
54703701 |
T |
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| Q |
116 |
tcaaaaagcacgctggagtcatatttggattagaagttacagcttgataaaga |
168 |
Q |
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|| |||| | |||||| | || || ||||||||||||| |||||| |||||| |
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| T |
54703700 |
tccaaaaatatgctggaataattttcggattagaagttaaagcttgttaaaga |
54703648 |
T |
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