View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7832_high_23 (Length: 345)
Name: NF7832_high_23
Description: NF7832
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7832_high_23 |
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Alignment Details
Target: chr4 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 11 - 328
Target Start/End: Complemental strand, 28034879 - 28034568
Alignment:
| Q |
11 |
atgttagaatcaaattaattaaatcgtagaataaaaacacagaagtaaacgtagtgataaaatattgtggggcattttttgttaatgtgggagttatatc |
110 |
Q |
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| T |
28034879 |
atgttagaatcaa-ttaattaaatcatagaataaaaacataaaagtaaacgtagtgttaaaatattgtggggcattttttgttaatgtgggaattatatc |
28034781 |
T |
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| Q |
111 |
aggcaccaaacccatcttcccatgttagaattcatagcatttttggctaagcagcctaatcaaattatcttgtaacgctttattattgcaatcaataaat |
210 |
Q |
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| T |
28034780 |
ag-caccaagtccatcttcccatgttagaattgatagcatttttggctaagcagcctaatcaaattatcttgtaatgctt----attgcaatcaataaat |
28034686 |
T |
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| Q |
211 |
gatacaagttggccttcctccataaaactttgctgcttttatagataacttcttctctatatttcacaaatactttcgatgtgcgacatttgtttgcaag |
310 |
Q |
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| T |
28034685 |
gatacaagttgaccttcctccataaaactttgctgcttttatagataacttcttctctatatttcacaaatactttcgatgtgcgacatttgtttgcaag |
28034586 |
T |
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| Q |
311 |
cactatggactatggtat |
328 |
Q |
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| T |
28034585 |
cactatggactatggtat |
28034568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 167 - 217
Target Start/End: Complemental strand, 1357205 - 1357158
Alignment:
| Q |
167 |
taatcaaattatcttgtaacgctttattattgcaatcaataaatgatacaa |
217 |
Q |
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| T |
1357205 |
taatcaaattatcttgtaatgcttcatt---gcaatcaataaatgatacaa |
1357158 |
T |
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