View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7832_high_25 (Length: 320)
Name: NF7832_high_25
Description: NF7832
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7832_high_25 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 258; Significance: 1e-143; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 16 - 302
Target Start/End: Original strand, 8362693 - 8362979
Alignment:
| Q |
16 |
ataatatcaaataggttctattttcacgtcattttctgttttatcgaggacaatatttacgttgtggtgttacttgtattatgtcatgttcatatagtat |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8362693 |
ataatatcaaataggttctattttcacgtcattttctgttttattgaggacaatatttacgttgtggtgttacttgtattatgtcatgttcatatagtat |
8362792 |
T |
|
| Q |
116 |
ttgcagccaatcttgagatggatatcaattcccacaccttataactttcttccaacacagaacaggagtctgcaaatcaccatcaacagttaacggaaag |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8362793 |
ttgcagccaatcttgagatggatatcaattcccacaccttataactttcttccaacatagaacaggagtctgcaaatcaccatcaacagttaacggaaag |
8362892 |
T |
|
| Q |
216 |
tttaaaaatagttaaactggtnnnnnnnttcatcttttaagggaagactgtgtgtttcaaaacaaaagaagaggatattgtaattta |
302 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8362893 |
tttaaaaatagttaaactggtaaaaaaattcatcttttaagggaagactgtgtgtttcaaaacaaaagaagaggatattgtaattta |
8362979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University