View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7832_high_3 (Length: 844)
Name: NF7832_high_3
Description: NF7832
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7832_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 805; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 805; E-Value: 0
Query Start/End: Original strand, 12 - 828
Target Start/End: Complemental strand, 13974457 - 13973641
Alignment:
| Q |
12 |
gagtttggtgttgatggaaggagagttggtggttcgaaccgtggaacagttgcagcggtcggttttgctatgatgtttggagcatttgttggtcttggtg |
111 |
Q |
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| T |
13974457 |
gagtttggtgttgatggaaggagagttggtggttcgaaccgtggaacggttgcagcggtcggttttgctatgatgtttggagcatttgttggtcttggtg |
13974358 |
T |
|
| Q |
112 |
ctatggtgatcaagtggcataagaggcctcaagattggcaaaagaggaatagtttctcttcatggttgcttcctttacacgccggcgacacaagtttcat |
211 |
Q |
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| T |
13974357 |
ctatggtgatcaagtggcataagaggcctcaagattggcaaaagaggaatagtttctcttcatggttgcttcctttacacgccggcgacacaagtttcat |
13974258 |
T |
|
| Q |
212 |
gagtagcaagaattcaatagggaaaagcaacattttctcatcatcaatgggattaggaaggattttctccttttcagaaatacaagaagcaacaaagaat |
311 |
Q |
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| T |
13974257 |
gagtagcaagaattcaatagggaaaagcaacattttctcatcatcaatgggattaggaaggattttctccttttcagaaatacaagaagcaacaaagaat |
13974158 |
T |
|
| Q |
312 |
tttgactccaaaaacattattggtgttggtggttttggtaatgtttatttaggtgtgattgatgaaggggttcaagttgctgtcaagagaggaaatccac |
411 |
Q |
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| T |
13974157 |
tttgactccaaaaacattattggtgttggtggttttggtaatgtttatttaggtgtgattgatgaaggggttcaagttgctgtcaagagaggaaatccac |
13974058 |
T |
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| Q |
412 |
aatcagaacaaggtatcaatgaattccagactgaaatccaaatgttgtctaagcttagacatagacatttggtttcaatgattggatattgtgatgaaaa |
511 |
Q |
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| T |
13974057 |
aatcagaacaaggtatcaatgaattccagactgaaatccaaatgttgtctaagcttagacatagacatttggtttcaatgattggatattgtgatgaaaa |
13973958 |
T |
|
| Q |
512 |
tgaagaaatgattcttgtttatgagtacatgcctaatggacatcttagagatcatctttatggaaagaacatgccagcactttcttggaaacaaaggttg |
611 |
Q |
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| T |
13973957 |
tgaagaaatgattcttgtttatgagtacatgcctaatggacatcttagagatcatctttatggaaagaacatgccagcactttcttggaaacaaaggttg |
13973858 |
T |
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| Q |
612 |
gacatttgcattggatcggcaagaggtcttcattaccttcacactggtacagcacaaggaatcattcatcgcgacgttaagacaacaaacatcttgcttg |
711 |
Q |
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| T |
13973857 |
gacatttgcattggatcggcaagaggtcttcattaccttcacactggtacggcacaaggaatcattcatcgcgacgttaagacaacaaacatcttgcttg |
13973758 |
T |
|
| Q |
712 |
atgagaatttcacggctaaggtatccgattttggactttcaaaagacgcgcctatgggacaaggtcacgttagtactgccgtgaaaggtagttttggtta |
811 |
Q |
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| T |
13973757 |
atgagaatttcacggctaaggtatccgattttggactttcaaaagacgcgcctatgggacaaggtcacgttagtaccgccgtgaaaggtagttttggtta |
13973658 |
T |
|
| Q |
812 |
tcttgaccctgagtact |
828 |
Q |
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| T |
13973657 |
tcttgaccctgagtact |
13973641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.000000000001; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 597 - 655
Target Start/End: Complemental strand, 35904726 - 35904668
Alignment:
| Q |
597 |
tggaaacaaaggttggacatttgcattggatcggcaagaggtcttcattaccttcacac |
655 |
Q |
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| T |
35904726 |
tggaagcaaaggttggagatttgcattggtgctgcaagaggtcttcattaccttcacac |
35904668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 363 - 551
Target Start/End: Complemental strand, 35904966 - 35904778
Alignment:
| Q |
363 |
ggtgtgattgatgaaggggttcaagttgctgtcaagagaggaaatccacaatcagaacaaggtatcaatgaattccagactgaaatccaaatgttgtcta |
462 |
Q |
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| T |
35904966 |
ggtgttattgataatggtgttaaagtggctattaagagatcaaatccacaatcagaacaaggagtaaatgaatttcaaactgaaattgagatgctttcaa |
35904867 |
T |
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| Q |
463 |
agcttagacatagacatttggtttcaatgattggatattgtgatgaaaatgaagaaatgattcttgtttatgagtacatgcctaatgga |
551 |
Q |
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| T |
35904866 |
agcttagacataaacatttagtgtctttgattggtttttgtgaggaagatgaggaaatgtgtttggtttatgattacatggctcatgga |
35904778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 792 - 826
Target Start/End: Complemental strand, 45098053 - 45098019
Alignment:
| Q |
792 |
gtgaaaggtagttttggttatcttgaccctgagta |
826 |
Q |
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|||||||||||||||||||||||||| |||||||| |
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| T |
45098053 |
gtgaaaggtagttttggttatcttgatcctgagta |
45098019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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