View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7832_high_37 (Length: 218)
Name: NF7832_high_37
Description: NF7832
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7832_high_37 |
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Alignment Details
Target: chr7 (Bit Score: 152; Significance: 1e-80; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 12 - 199
Target Start/End: Complemental strand, 7324239 - 7324052
Alignment:
| Q |
12 |
cagagagaaacaacagaaatcctagggaaagcgatagttaggaaagcaattcatatccctaaagaaatttaaggacaaaaaggacagaatcgtgtcaaac |
111 |
Q |
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| T |
7324239 |
cagaaagaaacaacggaaatcctagggaaagcgatagttaggaaagaaattcatatccctaaagaaatctaaagacaaaaaggacggaattgtgtcaaac |
7324140 |
T |
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| Q |
112 |
caaacaacaataacatgtcctgccggctacccgaatattccatcattttggaggtgatggagtggaccctgagaacgagttaggtatg |
199 |
Q |
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| T |
7324139 |
caaacaacaataacatgtcctgccggctccccgaatattccatcatttgggaggtgatggagtggaccctgagaacgagttaggtatg |
7324052 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 17 - 117
Target Start/End: Complemental strand, 27095731 - 27095631
Alignment:
| Q |
17 |
agaaacaacagaaatcctagggaaagcgatagttaggaaagcaattcatatccctaaagaaatttaaggacaaaaaggacagaatcgtgtcaaaccaaac |
116 |
Q |
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|||| ||||| |||| ||| ||||| ||||||||||| |||| |||||| ||||| ||||||| ||| |||||||| ||| | || |||||||||||||| |
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| T |
27095731 |
agaaccaacataaattctaaggaaaacgatagttaggcaagctattcatgtccctcaagaaatctaaagacaaaaaagacggcattgtgtcaaaccaaac |
27095632 |
T |
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| Q |
117 |
a |
117 |
Q |
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| T |
27095631 |
a |
27095631 |
T |
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