View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7832_high_5 (Length: 649)
Name: NF7832_high_5
Description: NF7832
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7832_high_5 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 414; Significance: 0; HSPs: 11)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 27 - 636
Target Start/End: Complemental strand, 30959189 - 30958580
Alignment:
| Q |
27 |
ttattgctctcccatttacaatctcctccttcatttcccaaacaccttatgcattcctctttcagaatataattcaactcaaaccccttatccaaaccat |
126 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| | ||||||||||||||||||||||||||||||||| |
|
|
| T |
30959189 |
ttattgctctcccatttacaatctcctccttcacttcccaaacaccttgagcattcctctttcatagtataattcaactcaaaccccttatccaaaccat |
30959090 |
T |
|
| Q |
127 |
tttcaagaaaatcatgatcaaaataatcatcataatctttcccaaaaggaaaatctgttcctactggcacttgaatatgactcatacaattccttgattc |
226 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||| || ||||||||||| |||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
30959089 |
tttcaagaaaatcatgatcaaaataatcaacataatctttcacaccaggaaaatctgctcctactggcacatgaatatgactcatacaattccttgattc |
30958990 |
T |
|
| Q |
227 |
ttccaacaacctatcttcattaccaacactatagaaagcaacattgggagatttacataaagttttttcaggtaaaataggagatggagaacaattgtag |
326 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||| ||| |||||||||||||||| ||||||| | |||||||||||||| |||||||||| |
|
|
| T |
30958989 |
ttccaacaacctatcttcattaccaacactaaagaaagcatgattcggagatttacataaagatttttcatttgtaataggagatggagtacaattgtag |
30958890 |
T |
|
| Q |
327 |
tatatagtgatgttatagacagttgggagatgttggaacggaggtggaaacaaataagtatcatcatattgaggagaacagagattttgatgaaggtctg |
426 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| |||||||||| |||||||| |
|
|
| T |
30958889 |
tatatagtgatgttatagacacttgggagatgttggaacggaggtggaaacaaataagtataattatattgaggagaacaaagattttgatcaaggtctg |
30958790 |
T |
|
| Q |
427 |
ttcttttgagtttgatggtgtgtttttctatgttgatgtcaagtactgtgaaattttgtgacgataacagaatggtagtattttggttgttatggcagta |
526 |
Q |
| |
|
||||||| ||||| ||||||||| ||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| | | || | | |||| |
|
|
| T |
30958789 |
ttctttttagtttcatggtgtgtgtttctatgttgatgtcaagtactgttaaattttgtgaggataacagaatggtagtgatgttattttccttacagtt |
30958690 |
T |
|
| Q |
527 |
aagatgaaatgatttaccagcaccacatggcgaatgacgattttgtccccagaacggataagagatgttggtgattcttccgcagttgtagaagtttttg |
626 |
Q |
| |
|
||| | ||||| ||||||||| ||||| || ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30958689 |
aaggtaaaatggtttaccagctccacaaggagaaagacgattttgtccccagaacggataagagatgttggtgattcttccgcagttgtagaagtttttg |
30958590 |
T |
|
| Q |
627 |
atgtctctgc |
636 |
Q |
| |
|
|||||||||| |
|
|
| T |
30958589 |
atgtctctgc |
30958580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 307 - 632
Target Start/End: Complemental strand, 31012717 - 31012389
Alignment:
| Q |
307 |
gagatggagaacaattgtagtatatagtgatgttatagacagttgggagatgttggaacggaggtggaaacaaataagtatcatcatattgaggagaaca |
406 |
Q |
| |
|
|||| |||| |||||||||| |||| |||||||| | |||||||| ||| ||| ||| |||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
31012717 |
gagagggagtacaattgtagaatattgtgatgttgttgacagttgaaggatattgaaacagaggtggaaacaaataagtatcattatattgaggagaaca |
31012618 |
T |
|
| Q |
407 |
gagattttgatgaaggtctgttcttttgagtttgatggtgtgtttttctatgttgatgtcaagtactgtgaaattttgtgacgataacagaatggtagta |
506 |
Q |
| |
|
|||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| |||||| |||||||||| |
|
|
| T |
31012617 |
aagattttgatcaaggtctgttcttttgagtttcatggtgtgtttttctatgttgatgtcaagtactgtgaatttttgtgagtataacaaaatggtagta |
31012518 |
T |
|
| Q |
507 |
ttttggttgttatggcagtaaagatgaaatgatttaccagcaccacatggcgaatgacgattttgtccccagaacggataagagatgttgg---tgattc |
603 |
Q |
| |
|
| || ||| || ||||||||||| ||| | | || ||||||||||| | || ||||||||| ||||||||| |||||||||||||||| | || | |
|
|
| T |
31012517 |
tctttgttattgtggcagtaaaggtgatacgggttgccagcaccacaatgaaaaggacgattttctccccagaatggataagagatgttggagataatac |
31012418 |
T |
|
| Q |
604 |
ttccgcagttgtagaagtttttgatgtct |
632 |
Q |
| |
|
|||||||| |||| |||||||||||||| |
|
|
| T |
31012417 |
ttccgcagctgtaagagtttttgatgtct |
31012389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 368 - 597
Target Start/End: Original strand, 15523165 - 15523394
Alignment:
| Q |
368 |
aggtggaaacaaataagtatcatcatattgaggagaacagagattttgatgaaggtctgttcttttgagtttgatggtgtgtttttctatgttgatgtca |
467 |
Q |
| |
|
||||||||||||||||||||||| | ||| ||||||||| |||||||||| ||||||||||||||||||||||||| |||| | || |||| || ||| |
|
|
| T |
15523165 |
aggtggaaacaaataagtatcattaaatttaggagaacatagattttgatcaaggtctgttcttttgagtttgatgatgtggtctttgctgtttatatca |
15523264 |
T |
|
| Q |
468 |
agtactgtgaaattttgtgacgataacagaatggtagtattttggttgttatggcagtaaagatgaaatgatttaccagcaccacatggcgaatgacgat |
567 |
Q |
| |
|
|||||||||||||||||||| ||||| |||||||| || | | |||||| ||||||| ||| | ||| | || ||||| |||||| | || |||||| |
|
|
| T |
15523265 |
agtactgtgaaattttgtgaggataagagaatggtggtggtgttgttgttgtggcagttaaggtaaaaagggttgccagccccacattgaaaaggacgat |
15523364 |
T |
|
| Q |
568 |
tttgtccccagaacggataagagatgttgg |
597 |
Q |
| |
|
|||||||||| || |||||||||||||||| |
|
|
| T |
15523365 |
tttgtccccaaaatggataagagatgttgg |
15523394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 317 - 506
Target Start/End: Complemental strand, 31002152 - 31001966
Alignment:
| Q |
317 |
acaattgtagtatatagtgatgttatagacagttgggagatgttggaacggaggtggaaacaaataagtatcatcatattgaggagaacagagattttga |
416 |
Q |
| |
|
|||||| |||||||| |||||||| |||| || | |||| ||| ||| |||||||||||||||||||||| || | | ||||||||| ||||||||| |
|
|
| T |
31002152 |
acaattatagtatattgtgatgtttatgacatttcgaagatattgaaacataggtggaaacaaataagtatcaacaaacttaggagaacaaagattttga |
31002053 |
T |
|
| Q |
417 |
tgaaggtctgttcttttgagtttgatggtgtgtttttctatgttgatgtcaagtactgtgaaattttgtgacgataacagaatggtagta |
506 |
Q |
| |
|
|||||||||||||| ||||| |||||||| |||| | ||||||| |||||||| |||||||||||||| |||| ||||||||||||| |
|
|
| T |
31002052 |
---aggtctgttcttttaagtttcatggtgtgattttttgtgttgatttcaagtacagtgaaattttgtgaggatatcagaatggtagta |
31001966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 367 - 442
Target Start/End: Complemental strand, 15493436 - 15493361
Alignment:
| Q |
367 |
gaggtggaaacaaataagtatcatcatattgaggagaacagagattttgatgaaggtctgttcttttgagtttgat |
442 |
Q |
| |
|
|||||||| ||||||||||||||| | ||||||||||||| |||||||||| |||||||||||||||||||||||| |
|
|
| T |
15493436 |
gaggtggagacaaataagtatcatgaaattgaggagaacatagattttgatcaaggtctgttcttttgagtttgat |
15493361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 382 - 487
Target Start/End: Original strand, 30663988 - 30664093
Alignment:
| Q |
382 |
aagtatcatcatattgaggagaacagagattttgatgaaggtctgttcttttgagtttgatggtgtgtttttctatgttgatgtcaagtactgtgaaatt |
481 |
Q |
| |
|
||||||||||| ||||||||||||| |||||||||| ||||||||||||||||||||||||| |||| ||| | |||| || | |||||| ||||||| |
|
|
| T |
30663988 |
aagtatcatcaaattgaggagaacaaagattttgatcaaggtctgttcttttgagtttgatgatgtgatttgttgtgtttatttgaagtacgttgaaatt |
30664087 |
T |
|
| Q |
482 |
ttgtga |
487 |
Q |
| |
|
|||||| |
|
|
| T |
30664088 |
ttgtga |
30664093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 382 - 506
Target Start/End: Complemental strand, 31221876 - 31221752
Alignment:
| Q |
382 |
aagtatcatcatattgaggagaacagagattttgatgaaggtctgttcttttgagtttgatggtgtgtttttctatgttgatgtcaagtactgtgaaatt |
481 |
Q |
| |
|
||||||||| |||||||||||||| | |||||| |||||||||||| || |||||||||||||| ||| | ||| || ||||||||||||||||| |
|
|
| T |
31221876 |
aagtatcattgtattgaggagaacaaaaattttgggaaaggtctgttctcttaagtttgatggtgtgaatttgtgagttaatatcaagtactgtgaaatt |
31221777 |
T |
|
| Q |
482 |
ttgtgacgataacagaatggtagta |
506 |
Q |
| |
|
|||||| ||||| |||||||||||| |
|
|
| T |
31221776 |
ttgtgatgataatagaatggtagta |
31221752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 38 - 134
Target Start/End: Complemental strand, 31012995 - 31012899
Alignment:
| Q |
38 |
ccatttacaatctcctccttcatttcccaaacaccttatgcattcctctttcagaatataattcaactcaaaccccttatccaaaccattttcaaga |
134 |
Q |
| |
|
|||||||||||||||| ||||| ||||||||||| || ||||||||||||| | ||||||||| ||||||||| |||| ||||||| ||| |||| |
|
|
| T |
31012995 |
ccatttacaatctccttcttcacttcccaaacactttgcacattcctctttcacactataattcacctcaaacccattattcaaaccacttttaaga |
31012899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 562 - 632
Target Start/End: Complemental strand, 15493132 - 15493062
Alignment:
| Q |
562 |
gacgattttgtccccagaacggataagagatgttggtgattcttccgcagttgtagaagtttttgatgtct |
632 |
Q |
| |
|
||||| ||||||||||||| |||||||||||||||| ||| |||| ||||||||| |||| ||||||||| |
|
|
| T |
15493132 |
gacgactttgtccccagaatggataagagatgttggagatatttccacagttgtaggagttcttgatgtct |
15493062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 562 - 634
Target Start/End: Complemental strand, 31001910 - 31001838
Alignment:
| Q |
562 |
gacgattttgtccccagaacggataagagatgttggtgattcttccgcagttgtagaagtttttgatgtctct |
634 |
Q |
| |
|
||||||||| ||||||||| ||||||||||||||||||| |||| ||||| ||| | ||||| |||||||| |
|
|
| T |
31001910 |
gacgattttttccccagaatggataagagatgttggtgagatttccacagttataggaattttttatgtctct |
31001838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 489 - 521
Target Start/End: Complemental strand, 30943469 - 30943437
Alignment:
| Q |
489 |
gataacagaatggtagtattttggttgttatgg |
521 |
Q |
| |
|
||||||||||||||||| ||||||||||||||| |
|
|
| T |
30943469 |
gataacagaatggtagtgttttggttgttatgg |
30943437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University