View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7832_high_7 (Length: 560)
Name: NF7832_high_7
Description: NF7832
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7832_high_7 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 520; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 520; E-Value: 0
Query Start/End: Original strand, 6 - 544
Target Start/End: Original strand, 47294854 - 47295393
Alignment:
| Q |
6 |
tttggtgttcgattgggctgaggcggctatttggacccggtggattgtattgaaaccttgtatggctattcttgattggagctgtgttaccagtaggtgt |
105 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47294854 |
tttggtgttcgattgggctgaggcggctatttggacccggtggattgtattgaaaccttgtatggctattcttgattggagctgtgttaccagtaggtgt |
47294953 |
T |
|
| Q |
106 |
tcggcaaaatttatcctgac-aggaaatggattcctcaggtaaacataccagttatatcttacagttttgctggaatgccacgtgcaactcctacatact |
204 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47294954 |
tcggcaaaatttatcctgactaggaaatggattcctcaggtaaacataccagttatatcttacagttttgctggaatgccacgtgcaactcctacatact |
47295053 |
T |
|
| Q |
205 |
aacaatgcaaggtatcctattgatcggaatgatcttcaactgctttgtgttccgcttccaaaaacgttggtggcagaaatataactatgttcaatatgtg |
304 |
Q |
| |
|
||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47295054 |
aacaatgcagggtatcctattgataggaatgatcttcaactgctttgtgttccgcttccaaaaacgttggtggcagaaatataactatgttcaatatgtg |
47295153 |
T |
|
| Q |
305 |
gcgcttgatgcaggccatacattttaggacttgaaaatggatgttgaaagtgcatgatatatataaactaaagtgacaatgtaattgcatattcatagtt |
404 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47295154 |
gcgcttgatgcaggccatacattttaggacttgaaaatggatgttgaaagtgcatgatatatataaactaaagtgacaatgtaattgcatattcatagtt |
47295253 |
T |
|
| Q |
405 |
tttggctgaacacactctcatgctttgtagtgacacaaaatttaatcacaaacaaataaaggatgttcaaggtagcagagcaataattggttcaatcata |
504 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47295254 |
tttggctgaacacactctcctgctttgtagtgacacaaaatttaatcacaaacaaataaaggatgttcaaggtagcagagcaataattggttcaatcata |
47295353 |
T |
|
| Q |
505 |
taggaatcggatgaacgtgttgaggtcctaccgatgcaat |
544 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47295354 |
taggaatcggatgaacgtgttgaggtcctaccgatgcaat |
47295393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 28 - 319
Target Start/End: Original strand, 56046665 - 56046959
Alignment:
| Q |
28 |
gcggctatttggacccggtggattgtattgaaaccttgtatggctattcttgattggagctgtgttaccagta--------ggtgttcggcaaaatttat |
119 |
Q |
| |
|
||||||||| ||||| ||||||||||| ||||||||||||||||||||||| ||||||| ||||| ||||| |||||| ||||||| || |
|
|
| T |
56046665 |
gcggctattcggaccaggtggattgtaccgaaaccttgtatggctattcttggttggagcagtgttgccagttcctgtttgggtgtttagcaaaatctac |
56046764 |
T |
|
| Q |
120 |
cctgacaggaaatggattcctcaggtaaacataccagttatatcttacagttttgctggaatgccacgtgcaactcctacatactaacaatgcaaggtat |
219 |
Q |
| |
|
||| ||| |||||||||||||| | |||||||||||||||||||||| |||||||||||||||||| ||||||||| || ||||| |||||| | |
|
|
| T |
56046765 |
cctaacaagaaatggattcctctgataaacataccagttatatcttatggttttgctggaatgccacctgcaactccaac----taacattgcaagctgg |
56046860 |
T |
|
| Q |
220 |
cctattgatcggaatgatcttcaactgctttgtgttccgcttccaaaaacgttggtggcagaaatataactatgttcaatatgtggcgcttgatgcaggc |
319 |
Q |
| |
|
| |||||| ||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||| ||||||| || | ||| |||||||||||| |
|
|
| T |
56046861 |
c-tattgaccggaatgatcttcaactactttgtgttccgcttccacaaacgttggtggcagaaatataattatgttctatccgcggcacttgatgcaggc |
56046959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 34 - 294
Target Start/End: Original strand, 55707979 - 55708241
Alignment:
| Q |
34 |
atttggacccggtggattgtattgaaaccttgtatggctattcttgattggagctgtgttaccag--------taggtgttcggcaaaatttatcctgac |
125 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||| ||||||| ||||| ||||||||||||| |||| ||| ||||||| ||| ||||| |
|
|
| T |
55707979 |
atttggacccggtggattgtatcgaaaccttgtatggttattctttattggggctgtgttaccagttcttgtttaggcattcagcaaaatatatgctgac |
55708078 |
T |
|
| Q |
126 |
aggaaatggattcctcaggtaaacataccagttatatcttacagttttgctggaatgccacgtgcaactcctacatactaacaatgcaaggtatcctatt |
225 |
Q |
| |
|
| |||||| || ||| | |||||||||||||||||||||| |||||||||||||||||| ||||||||| |||||| | |||| | ||||| |
|
|
| T |
55708079 |
aagaaatgcttttctctgataaacataccagttatatcttatggttttgctggaatgccacctgcaactcc----tactaatattgca--ggccgctatt |
55708172 |
T |
|
| Q |
226 |
gatcggaatgatcttcaactgctttgtgttccgcttccaaaaacgttggtggcagaaatataactatgt |
294 |
Q |
| |
|
|| |||||||||||||||| |||||||||| ||||||| |||||||||||||||||| |||| ||||| |
|
|
| T |
55708173 |
gagaggaatgatcttcaactactttgtgttctgcttccacaaacgttggtggcagaaacataattatgt |
55708241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 321 - 362
Target Start/End: Original strand, 56047351 - 56047392
Alignment:
| Q |
321 |
atacattttaggacttgaaaatggatgttgaaagtgcatgat |
362 |
Q |
| |
|
||||||||||||| |||||||| ||||||||||| ||||||| |
|
|
| T |
56047351 |
atacattttaggaattgaaaattgatgttgaaagcgcatgat |
56047392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 153 - 272
Target Start/End: Complemental strand, 35802497 - 35802383
Alignment:
| Q |
153 |
ccagttatatcttacagttttgctggaatgccacgtgcaactcctacatactaacaatgcaaggtatcctattgatcggaatgatcttcaactgctttgt |
252 |
Q |
| |
|
|||||||||||||| |||||||||||||||||| ||||||||| ||||||| |||||||| ||| || | | ||||||||||||||| |||||| |
|
|
| T |
35802497 |
ccagttatatcttatggttttgctggaatgccacctgcaactcc----tactaactttgcaaggtggcct-ttcaccagaatgatcttcaactactttgt |
35802403 |
T |
|
| Q |
253 |
gttccgcttccaaaaacgtt |
272 |
Q |
| |
|
|||||||||||| ||||||| |
|
|
| T |
35802402 |
gttccgcttccacaaacgtt |
35802383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University