View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7832_low_10 (Length: 522)
Name: NF7832_low_10
Description: NF7832
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7832_low_10 |
 | |
|
| [»] scaffold0070 (4 HSPs) |
| | |
|
| [»] scaffold1415 (1 HSPs) |
| | |
|
| [»] scaffold0830 (1 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 480; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 480; E-Value: 0
Query Start/End: Original strand, 18 - 505
Target Start/End: Original strand, 5080994 - 5081481
Alignment:
| Q |
18 |
ataagagctctaaaattcttaatctcaggtggaataattccagttaaagcattggaggacaagtttacctctaagatatcattgagattccaaaatgagg |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5080994 |
ataagagctctaaaattcttaatctcaggtggaataattccagttaaagcattggaggacaagtttacctctaagatatcattgagattccaaaatgagg |
5081093 |
T |
|
| Q |
118 |
aaggtatctcagaggctaacctattagatcctatgtaaaactttctaagagaagtcatatttcccaaacatgtcggtaacactcctacaagcttattgct |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5081094 |
aaggtatctcagaggctaacctattagatcctatgtaaaactttctaagagaagtcatatttcccaaacatgtcggtaacactcctacaagcttattgct |
5081193 |
T |
|
| Q |
218 |
tgttaaattcaactcactcaaactcgtaatgtcacaaagctcatcaatgatggatccttgcaggtcattgtagtcaagatccaaagactgaagtttttgt |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5081194 |
tgttaaattcaactcactcaaactcgtaatgtcacaaagctcatcaatgatggatccttgcaggtcattgtagtcaagatccaaagactgaagtttttgt |
5081293 |
T |
|
| Q |
318 |
aactctttaacagtctttgggatcgatccatttatattgttcctactaagagataatcgaatcaggttgctcatgtttccgatttctagtggaatatttc |
417 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5081294 |
aaccctttaacagtctttgggatcgatccatttatattgttcctactaagagataatcgaatcaggttgctcatgtttccgatttctagtggaatatttc |
5081393 |
T |
|
| Q |
418 |
cattaattccacaagaatttgcccaaaagtgttctaaagttaagtttccaatggacttgggaagttttaattgtaagttgatcatctc |
505 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5081394 |
cattcattccacaagaatttgcccaaaagtgttctaaagttaagtttccaatggacttgggaagttttaattgtaagttgatcatctc |
5081481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 20 - 494
Target Start/End: Complemental strand, 5100990 - 5100516
Alignment:
| Q |
20 |
aagagctctaaaattcttaatctcaggtggaataattccagttaaagcattggaggacaagtttacctctaagatatcattgagattccaaaatgaggaa |
119 |
Q |
| |
|
|||| |||| |||||||||||||||||||||| | || || |||||||||| || || | || ||||||||| ||||| | |||||||||||| || ||| |
|
|
| T |
5100990 |
aagaactctcaaattcttaatctcaggtggaagatttgcaattaaagcattagaagataggtctacctctaaaatatcttcgagattccaaaaggaagaa |
5100891 |
T |
|
| Q |
120 |
ggtatctcagaggctaacctattagatcctatgtaaaactttctaagagaagtcatatttcccaaacatgtcggtaacactcctacaagcttattgcttg |
219 |
Q |
| |
|
||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| | |||||||||||||| |
|
|
| T |
5100890 |
ggtatctcagaggttaacctattagatcctatgtgaaactttctaagagaagtcatatttcccaaacatgttggtaacactccaaaaagcttattgcttg |
5100791 |
T |
|
| Q |
220 |
ttaaattcaactcactcaaactcgtaatgtcacaaagctcatcaatgatggatccttgcaggtcattgtagtcaagatccaaagactgaagtttttgtaa |
319 |
Q |
| |
|
| ||| |||||||||||||||| |||| ||||||||||||||||| |||||||||||||| |||||||| |||||| |||||| |||||||| ||||| |
|
|
| T |
5100790 |
tcaaacccaactcactcaaactcctaatttcacaaagctcatcaatcatggatccttgcagcccattgtagccaagattcaaagattgaagtttatgtaa |
5100691 |
T |
|
| Q |
320 |
ctctttaacagtctttgggatcgatccatttatattgttcctactaagagataatcgaatcaggttgctcatgtttccgatttctagtggaatatttcca |
419 |
Q |
| |
|
| |||||| || | ||||| | |||||||| | | || || || ||||||||| |||||| |||||| |||||||||||||||| |||||||||||| |
|
|
| T |
5100690 |
ccctttaattgtactagggattgctccatttaaactattgcttctcagagataattgaatcaagttgcttatgtttccgatttctacaggaatatttcca |
5100591 |
T |
|
| Q |
420 |
ttaattccacaagaatttgcccaaaagtgttctaaagttaagtttccaatggacttgggaagttttaattgtaag |
494 |
Q |
| |
|
|||||||||||||||| |||| |||||||||||| || ||||||| ||||||||||||||||||| || ||||| |
|
|
| T |
5100590 |
ttaattccacaagaatctgccaaaaagtgttctacagataagtttgtaatggacttgggaagttttgatagtaag |
5100516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 18 - 485
Target Start/End: Complemental strand, 5118551 - 5118084
Alignment:
| Q |
18 |
ataagagctctaaaattcttaatctcaggtggaataattccagttaaagcattggaggacaagtttacctctaagatatcattgagattccaaaatgagg |
117 |
Q |
| |
|
|||| |||||| |||||||||||||||||||||| ||||| |||||||||||||||| | |||||||||||| ||||| ||||||||||||||||| |
|
|
| T |
5118551 |
ataacagctctcaaattcttaatctcaggtggaagttttccaattaaagcattggaggatacgtttacctctaaaatatctccgagattccaaaatgagg |
5118452 |
T |
|
| Q |
118 |
aaggtatctcagaggctaacctattagatcctatgtaaaactttctaagagaagtcatatttcccaaacatgtcggtaacactcctacaagcttattgct |
217 |
Q |
| |
|
|||||||| |||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| |
|
|
| T |
5118451 |
aaggtatcgcagaggttaacctattagatcctatgtgaaactttctaagagaagtcatatttcccaaacatgttggtaacactccagaaagcttattgct |
5118352 |
T |
|
| Q |
218 |
tgttaaattcaactcactcaaactcgtaatgtcacaaagctcatcaatgatggatccttgcaggtcattgtagtcaagatccaaagactgaagtttttgt |
317 |
Q |
| |
|
|| ||||| ||| ||||||||||| |||| ||||||||||||||||| |||||||||||||| ||||||| ||||||| ||| | |||||||| ||| |
|
|
| T |
5118351 |
tgataaatacaatacactcaaactcttaatttcacaaagctcatcaatcatggatccttgcagtccattgtaaccaagatctaaatattgaagtttatgt |
5118252 |
T |
|
| Q |
318 |
aactctttaacagtctttgggatcgatccatttatattgttcctactaagagataatcgaatcaggttgctcatgtttccgatttctagtggaatatttc |
417 |
Q |
| |
|
||| |||||| ||||| |||||||||| || || || | |||||||| ||| |||||||||||||||| |||||||||||||||||||| |
|
|
| T |
5118251 |
aaccctttaattacaccagggattgatccatttaaatcattatccctcaaagataatccaataaggttgctcatgtttctgatttctagtggaatatttc |
5118152 |
T |
|
| Q |
418 |
cattaattccacaagaatttgcccaaaagtgttctaaagttaagtttccaatggacttgggaagtttt |
485 |
Q |
| |
|
|| ||||||||||||| | |||| ||||||||||| | |||||||||||||||||||||||||||| |
|
|
| T |
5118151 |
caataattccacaagattctgcctgaaagtgttctacggataagtttccaatggacttgggaagtttt |
5118084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 18 - 485
Target Start/End: Original strand, 14413299 - 14413766
Alignment:
| Q |
18 |
ataagagctctaaaattcttaatctcaggtggaataattccagttaaagcattggaggacaagtttacctctaagatatcattgagattccaaaatgagg |
117 |
Q |
| |
|
|||| |||||| |||||||||||||||||||||| | ||||| |||||||||||||||| | |||||||||||| ||||| | ||||||||||| |||| |
|
|
| T |
14413299 |
ataacagctctcaaattcttaatctcaggtggaagatttccaattaaagcattggaggataggtttacctctaaaatatcttcaagattccaaaaggagg |
14413398 |
T |
|
| Q |
118 |
aaggtatctcagaggctaacctattagatcctatgtaaaactttctaagagaagtcatatttcccaaacatgtcggtaacactcctacaagcttattgct |
217 |
Q |
| |
|
||||||| ||||| |||||| |||||||||| ||||| ||||||||| ||||||||||||||||||||||| ||||||||||| | |||||||||||| |
|
|
| T |
14413399 |
aaggtatactagaggttaacctgttagatcctaagtaaagctttctaagtgaagtcatatttcccaaacatgttggtaacactccaaaaagcttattgct |
14413498 |
T |
|
| Q |
218 |
tgttaaattcaactcactcaaactcgtaatgtcacaaagctcatcaatgatggatccttgcaggtcattgtagtcaagatccaaagactgaagtttttgt |
317 |
Q |
| |
|
| |||||| ||||||||||||||| |||| ||||||||||||||||| ||||||||||| || |||||| |||| || ||||| |||||||| ||| |
|
|
| T |
14413499 |
tattaaatataactcactcaaactcttaatttcacaaagctcatcaatcatggatccttgtagtctattgtaaccaagttctaaagattgaagtttatgt |
14413598 |
T |
|
| Q |
318 |
aactctttaacagtctttgggatcgatccatttatattgttcctactaagagataatcgaatcaggttgctcatgtttccgatttctagtggaatatttc |
417 |
Q |
| |
|
||| |||||| | ||||| |||||||||| || || | | |||||||| ||||||||||||||||||||| |||| ||||||||||||| |
|
|
| T |
14413599 |
aaccctttaattgaaccagggattgatccatttaaatcattatcccacaaagataatctaatcaggttgctcatgtttccagtttcaagtggaatatttc |
14413698 |
T |
|
| Q |
418 |
cattaattccacaagaatttgcccaaaagtgttctaaagttaagtttccaatggacttgggaagtttt |
485 |
Q |
| |
|
|||||||||||||||||| ||||||||||| |||||||| |||||||||||||||| ||||||||||| |
|
|
| T |
14413699 |
cattaattccacaagaatctgcccaaaagtattctaaagataagtttccaatggacctgggaagtttt |
14413766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 23 - 481
Target Start/End: Complemental strand, 16885259 - 16884801
Alignment:
| Q |
23 |
agctctaaaattcttaatctcaggtggaataattccagttaaagcattggaggacaagtttacctctaagatatcattgagattccaaaatgaggaaggt |
122 |
Q |
| |
|
|||||| |||||||| |||||| |||||| | |||| |||||| ||||||| || |||| ||||||| ||||| |||||||||||||| ||||||||| |
|
|
| T |
16885259 |
agctctcaaattcttgatctcaagtggaagatttccggttaaatcattggaagataagtacacctctagaatatctttgagattccaaaaggaggaaggt |
16885160 |
T |
|
| Q |
123 |
atctcagaggctaacctattagatcctatgtaaaactttctaagagaagtcatatttcccaaacatgtcggtaacactcctacaagcttattgcttgtta |
222 |
Q |
| |
|
||||| |||| ||||||||||||||||||||| ||||||||||||||| ||||||||||||| ||||| ||||||||||| | ||||||||||||||||| |
|
|
| T |
16885159 |
atctctgaggttaacctattagatcctatgtacaactttctaagagaactcatatttcccaagcatgttggtaacactccgaaaagcttattgcttgtta |
16885060 |
T |
|
| Q |
223 |
aattcaactcactcaaactcgtaatgtcacaaagctcatcaatgatggatccttgcaggtcattgtagtcaagatccaaagactgaagtttttgtaactc |
322 |
Q |
| |
|
| |||||||| |||||| ||| || |||| ||| | |||||||||||||||||| |||| | |||||| | |||||||||||| || ||||| | |
|
|
| T |
16885059 |
aggacaactcacctaaactcctaagttcgcaaacctcgttaatgatggatccttgcagtccattatggtcaagtttcaaagactgaagcttatgtaaacc |
16884960 |
T |
|
| Q |
323 |
tttaacagtctttgggatcgatccatttatattgttcctactaagagataatcgaatcaggttgctcatgtttccgatttctagtggaatatttccatta |
422 |
Q |
| |
|
||||| || | ||||| |||||||| || || | || |||||||| ||||||||||||||||| ||||||||||||||||||||||||||| || |
|
|
| T |
16884959 |
tttaattgtagtagggattagtccatttagatcattgttcctcagagataagcgaatcaggttgctcatatttccgatttctagtggaatatttccacta |
16884860 |
T |
|
| Q |
423 |
attccacaagaatttgcccaaaagtgttctaaagttaagtttccaatggacttgggaag |
481 |
Q |
| |
|
||||||||||||||||||||||||| ||||| || |||||||||||||||||||||||| |
|
|
| T |
16884859 |
attccacaagaatttgcccaaaagttttctacagataagtttccaatggacttgggaag |
16884801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0070 (Bit Score: 54; Significance: 9e-22; HSPs: 4)
Name: scaffold0070
Description:
Target: scaffold0070; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 24 - 313
Target Start/End: Complemental strand, 15857 - 15568
Alignment:
| Q |
24 |
gctctaaaattcttaatctcaggtggaataattccagttaaagcattggaggacaagtttacctctaagatatcattgagattccaaaatgaggaaggta |
123 |
Q |
| |
|
||||| |||||| ||||||||| |||| | | ||| | || ||||| |||||||| | || |||||||||||| ||| | |||||| |||||||||| |
|
|
| T |
15857 |
gctctcaaattcccaatctcaggcggaagattaccaatgaaggcattagaggacaaatctagctctaagatatctatgacactccaaagagaggaaggta |
15758 |
T |
|
| Q |
124 |
tctcagaggctaacctattagatcctatgtaaaactttctaagagaagtcatatttcccaaacatgtcggtaacactcctacaagcttattgcttgttaa |
223 |
Q |
| |
|
||| |||| | || |||||||| ||||| ||| || ||| |||| ||||||||||||||||||||||||| ||||| |||||||| | ||| |
|
|
| T |
15757 |
tcttagagttcagactgttagatccaatgtataaccttataatagaactcatatttcccaaacatgtcggtaaaactcccgagagcttattattgtttag |
15658 |
T |
|
| Q |
224 |
attcaactcactcaaactcgtaatgtcacaaagctcatcaatgatggatccttgcaggtcattgtagtcaagatccaaagactgaagttt |
313 |
Q |
| |
|
|| |||||||| ||||||| | || ||||||| ||| ||||| | |||||||| || |||||| | ||||||||||| |||||||||| |
|
|
| T |
15657 |
atacaactcacccaaactcttcatttcacaaaactcttcaataaatgatccttgtagtccattgttgccaagatccaaatactgaagttt |
15568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0070; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 63 - 196
Target Start/End: Complemental strand, 35858 - 35725
Alignment:
| Q |
63 |
aaagcattggaggacaagtttacctctaagatatcattgagattccaaaatgaggaaggtatctcagaggctaacctattagatcctatgtaaaactttc |
162 |
Q |
| |
|
||||||||||||||||| | || | ||| |||||| ||||| ||||| || |||||||||| |||| || | |||||||||| || || |||| |
|
|
| T |
35858 |
aaagcattggaggacaaatctaacattaatatatcagtgagaccccaaagagatgaaggtatcttagagttcaaattgttagatcctacgttcaattttc |
35759 |
T |
|
| Q |
163 |
taagagaagtcatatttcccaaacatgtcggtaa |
196 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| |
|
|
| T |
35758 |
taagagaagtcatatttcccaaacatgttggtaa |
35725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0070; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 38 - 196
Target Start/End: Complemental strand, 49365 - 49207
Alignment:
| Q |
38 |
aatctcaggtggaataattccagttaaagcattggaggacaagtttacctctaagatatcattgagattccaaaatgaggaaggtatctcagaggctaac |
137 |
Q |
| |
|
|||||||||||||| | | ||| | || ||||| |||||||| | || |||||||||||| ||| | |||||| |||||||| |||| |||| | |
|
|
| T |
49365 |
aatctcaggtggaagattaccaatgaaggcattagaggacaaatctatctctaagatatctatgacactccaaagagaggaaggcatcttagagttcaga |
49266 |
T |
|
| Q |
138 |
ctattagatcctatgtaaaactttctaagagaagtcatatttcccaaacatgtcggtaa |
196 |
Q |
| |
|
|| |||||||| ||||| ||| || ||| |||| ||||||||||||||||||| ||||| |
|
|
| T |
49265 |
ctgttagatccaatgtataaccttataatagaactcatatttcccaaacatgttggtaa |
49207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0070; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 385 - 481
Target Start/End: Complemental strand, 35536 - 35440
Alignment:
| Q |
385 |
tgctcatgtttccgatttctagtggaatatttccattaattccacaagaatttgcccaaaagtgttctaaagttaagtttccaatggacttgggaag |
481 |
Q |
| |
|
||||||||||||| | |||||| ||||||| ||| ||||||||| || ||||||| |||| |||| |||||| ||||||||| ||||| ||||| |
|
|
| T |
35536 |
tgctcatgtttccaacttctaggggaatataaccaccaattccacatgattttgccctgaagtattctgaagttatgtttccaattgacttaggaag |
35440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 51; Significance: 5e-20; HSPs: 12)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 66 - 296
Target Start/End: Original strand, 25312288 - 25312518
Alignment:
| Q |
66 |
gcattggaggacaagtttacctctaagatatcattgagattccaaaatgaggaaggtatctcagaggctaacctattagatcctatgtaaaactttctaa |
165 |
Q |
| |
|
||||||||||| || | |||| ||||||||| ||||| |||||| |||||||||||| |||| || | ||||||||||| || || ||||||| |
|
|
| T |
25312288 |
gcattggaggataaatctaccattaagatatctatgagactccaaagagaggaaggtatcatagagttaaaattgttagatcctatatacaattttctaa |
25312387 |
T |
|
| Q |
166 |
gagaagtcatatttcccaaacatgtcggtaacactcctacaagcttattgcttgttaaattcaactcactcaaactcgtaatgtcacaaagctcatcaat |
265 |
Q |
| |
|
||||||||||||||||||||||||| ||||| ||||| ||||||||| || || || ||| |||| ||||||| | || ||||||| ||| ||||| |
|
|
| T |
25312388 |
gagaagtcatatttcccaaacatgttggtaaaactccagaaagcttattattttctagatacaattcacccaaactcttcatttcacaaaactcttcaat |
25312487 |
T |
|
| Q |
266 |
gatggatccttgcaggtcattgtagtcaaga |
296 |
Q |
| |
|
| |||||||| || ||||||||| ||||| |
|
|
| T |
25312488 |
aaatgatccttggagttcattgtagccaaga |
25312518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 38 - 233
Target Start/End: Complemental strand, 22899609 - 22899414
Alignment:
| Q |
38 |
aatctcaggtggaataattccagttaaagcattggaggacaagtttacctctaagatatcattgagattccaaaatgaggaaggtatctcagaggctaac |
137 |
Q |
| |
|
||||||| |||||||| | ||| | |||||||| |||||||| | ||| | ||||||||| ||||| |||||| |||||||||||| |||| || |
|
|
| T |
22899609 |
aatctcaagtggaatattaccaatgaaagcattagaggacaaatctacttgtaagatatctctgagactccaaagagaggaaggtatcgtagagttcaaa |
22899510 |
T |
|
| Q |
138 |
ctattagatcctatgtaaaactttctaagagaagtcatatttcccaaacatgtcggtaacactcctacaagcttattgcttgttaaattcaactca |
233 |
Q |
| |
|
| ||| |||||||||| || ||||| ||||||||||| |||||||||||||| ||||| || || | ||||||||| ||| ||||| ||||||| |
|
|
| T |
22899509 |
ttgttatatcctatgtataattttcttagagaagtcatgtttcccaaacatgttggtaaaacaccaaaaagcttattactttctaaatacaactca |
22899414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 89 - 325
Target Start/End: Original strand, 25716505 - 25716741
Alignment:
| Q |
89 |
taagatatcattgagattccaaaatgaggaaggtatctcagaggctaacctattagatcctatgtaaaactttctaagagaagtcatatttcccaaacat |
188 |
Q |
| |
|
||||||||| |||||| |||||| ||||| ||||||| |||| || ||||||||| |||| || ||||||||||||||||||||||||||||| |
|
|
| T |
25716505 |
taagatatctttgagactccaaagagaggacggtatcttagagttcaaatcattagatccaatgttcaatattctaagagaagtcatatttcccaaacat |
25716604 |
T |
|
| Q |
189 |
gtcggtaacactcctacaagcttattgcttgttaaattcaactcactcaaactcgtaatgtcacaaagctcatcaatgatggatccttgcaggtcattgt |
288 |
Q |
| |
|
|| ||||| ||||| |||||||| || | || |||||||| ||||||| | || ||||||| ||| ||||| | |||||||| || |||||| |
|
|
| T |
25716605 |
gttggtaaaactccagagagcttattattttccagatacaactcacccaaactcttcatttcacaaaactcttcaataaatgatccttgtagtccattgt |
25716704 |
T |
|
| Q |
289 |
agtcaagatccaaagactgaagtttttgtaactcttt |
325 |
Q |
| |
|
| |||||| |||| |||||||||| || |||||||| |
|
|
| T |
25716705 |
tgccaagattcaaatactgaagtttctgcaactcttt |
25716741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 24 - 196
Target Start/End: Original strand, 25476908 - 25477080
Alignment:
| Q |
24 |
gctctaaaattcttaatctcaggtggaataattccagttaaagcattggaggacaagtttacctctaagatatcattgagattccaaaatgaggaaggta |
123 |
Q |
| |
|
||||| |||||| |||||||||||||| | | ||| | || ||||| | ||||| | ||||||||||||||| ||| | |||||| |||||||||| |
|
|
| T |
25476908 |
gctctcaaattcccaatctcaggtggaagattcccaatgaaggcattataagacaaatctacctctaagatatctatgacactccaaagagaggaaggta |
25477007 |
T |
|
| Q |
124 |
tctcagaggctaacctattagatcctatgtaaaactttctaagagaagtcatatttcccaaacatgtcggtaa |
196 |
Q |
| |
|
||| |||| | |||||||||||||||| | | |||||||||||||||||||| |||| ||||| ||||| |
|
|
| T |
25477008 |
tcttagagttcagactattagatcctatgtctatcattctaagagaagtcatattttccaagcatgttggtaa |
25477080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 66 - 202
Target Start/End: Original strand, 25605926 - 25606062
Alignment:
| Q |
66 |
gcattggaggacaagtttacctctaagatatcattgagattccaaaatgaggaaggtatctcagaggctaacctattagatcctatgtaaaactttctaa |
165 |
Q |
| |
|
||||| |||||||| | ||||| ||||||||| ||| | |||||| ||||||||||||| |||| | || |||||||||||||| ||| || ||| |
|
|
| T |
25605926 |
gcattagaggacaaatctacctgtaagatatctatgacactccaaagagaggaaggtatcttagagttcagactgttagatcctatgtataaccttataa |
25606025 |
T |
|
| Q |
166 |
gagaagtcatatttcccaaacatgtcggtaacactcc |
202 |
Q |
| |
|
|||| ||||||||||||||||||| ||||| ||||| |
|
|
| T |
25606026 |
tagaactcatatttcccaaacatgttggtaaaactcc |
25606062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 63 - 196
Target Start/End: Complemental strand, 24874238 - 24874105
Alignment:
| Q |
63 |
aaagcattggaggacaagtttacctctaagatatcattgagattccaaaatgaggaaggtatctcagaggctaacctattagatcctatgtaaaactttc |
162 |
Q |
| |
|
||||||||||||||||| | || | ||| |||||| ||||| ||||| || |||||||||| |||| || | |||||||||| || || |||| |
|
|
| T |
24874238 |
aaagcattggaggacaaatctaacattaatatatcagtgagaccccaaagagatgaaggtatcttagagttcaaattgttagatcctacgttcaattttc |
24874139 |
T |
|
| Q |
163 |
taagagaagtcatatttcccaaacatgtcggtaa |
196 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| |
|
|
| T |
24874138 |
taagagaagtcatatttcccaaacatgttggtaa |
24874105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 163 - 321
Target Start/End: Original strand, 25392678 - 25392836
Alignment:
| Q |
163 |
taagagaagtcatatttcccaaacatgtcggtaacactcctacaagcttattgcttgttaaattcaactcactcaaactcgtaatgtcacaaagctcatc |
262 |
Q |
| |
|
|||||||| ||||||||||||||||||| ||||| ||||| |||||||| || ||| || |||||||| ||||||| | || ||||||| ||| || |
|
|
| T |
25392678 |
taagagaaatcatatttcccaaacatgttggtaaaactccagagagcttattattttttagatacaactcacccaaactcttcatttcacaaatctcctc |
25392777 |
T |
|
| Q |
263 |
aatgatggatccttgcaggtcattgtagtcaagatccaaagactgaagtttttgtaact |
321 |
Q |
| |
|
||| | |||||||| || |||||| | |||| |||| ||||||||||||| |||| |
|
|
| T |
25392778 |
aataaatgatccttgtagtccattgttgctaagactcaaaaactgaagtttttgcaact |
25392836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 383 - 481
Target Start/End: Original strand, 25696966 - 25697064
Alignment:
| Q |
383 |
gttgctcatgtttccgatttctagtggaatatttccattaattccacaagaatttgcccaaaagtgttctaaagttaagtttccaatggacttgggaag |
481 |
Q |
| |
|
||||||||||||||| | |||| | |||||||| |||| ||||||||| || | |||| ||||| |||| |||||| ||||||||| ||||| ||||| |
|
|
| T |
25696966 |
gttgctcatgtttccaacttcttggggaatattaccatcaattccacatgattctgccgtaaagtattctgaagttaggtttccaattgacttaggaag |
25697064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 63 - 196
Target Start/End: Original strand, 25342266 - 25342399
Alignment:
| Q |
63 |
aaagcattggaggacaagtttacctctaagatatcattgagattccaaaatgaggaaggtatctcagaggctaacctattagatcctatgtaaaactttc |
162 |
Q |
| |
|
||||||||||||||||| | || | ||| |||||| ||||| ||||| || |||||||||| |||| || | |||||||||| || || |||| |
|
|
| T |
25342266 |
aaagcattggaggacaaatctaacattaatatatcagtgagaccccaaagagatgaaggtatcttagagttcaaattgttagatcctacgttcaattttc |
25342365 |
T |
|
| Q |
163 |
taagagaagtcatatttcccaaacatgtcggtaa |
196 |
Q |
| |
|
|||||||||||||||||||| ||||||| ||||| |
|
|
| T |
25342366 |
taagagaagtcatatttcccgaacatgttggtaa |
25342399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 384 - 481
Target Start/End: Original strand, 25342587 - 25342684
Alignment:
| Q |
384 |
ttgctcatgtttccgatttctagtggaatatttccattaattccacaagaatttgcccaaaagtgttctaaagttaagtttccaatggacttgggaag |
481 |
Q |
| |
|
|||||||||||||| | ||||| |||||||| || | ||||||||| || |||||||| ||| |||| |||||| ||||||||| ||||| ||||| |
|
|
| T |
25342587 |
ttgctcatgtttccaacttctacgggaatattaccctcaattccacatgattttgcccagaagaattctgaagttatgtttccaattgactttggaag |
25342684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 141 - 196
Target Start/End: Original strand, 25571247 - 25571302
Alignment:
| Q |
141 |
ttagatcctatgtaaaactttctaagagaagtcatatttcccaaacatgtcggtaa |
196 |
Q |
| |
|
|||||||||| || || |||||||||||||||||||||||| ||||||| ||||| |
|
|
| T |
25571247 |
ttagatcctacgttcaattttctaagagaagtcatatttccctaacatgttggtaa |
25571302 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 383 - 481
Target Start/End: Original strand, 25324262 - 25324360
Alignment:
| Q |
383 |
gttgctcatgtttccgatttctagtggaatatttccattaattccacaagaatttgcccaaaagtgttctaaagttaagtttccaatggacttgggaag |
481 |
Q |
| |
|
||||||||||||||| | |||||| ||||||| ||| ||||||||| || ||||||| | || |||| |||||| ||||||||| ||||| ||||| |
|
|
| T |
25324262 |
gttgctcatgtttccaacttctaggggaatataaccaccaattccacatgattttgccctgatgtattctgaagttatgtttccaattgacttaggaag |
25324360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1415 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold1415
Description:
Target: scaffold1415; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 24 - 202
Target Start/End: Original strand, 283 - 461
Alignment:
| Q |
24 |
gctctaaaattcttaatctcaggtggaataattccagttaaagcattggaggacaagtttacctctaagatatcattgagattccaaaatgaggaaggta |
123 |
Q |
| |
|
||||| |||||| |||||||| ||||| | | ||| | || ||||| |||||||| | || |||||||||||| ||| | |||||| |||||||||| |
|
|
| T |
283 |
gctctcaaattcccaatctcagttggaagattaccaatgaaggcattagaggacaaatctagctctaagatatctatgacactccaaagagaggaaggta |
382 |
T |
|
| Q |
124 |
tctcagaggctaacctattagatcctatgtaaaactttctaagagaagtcatatttcccaaacatgtcggtaacactcc |
202 |
Q |
| |
|
||| |||| | || |||||||| ||||| ||| || ||| |||||||||||||||||||||||| ||||| ||||| |
|
|
| T |
383 |
tcttagagttgagactgttagatccaatgtataaccttataatagaagtcatatttcccaaacatgttggtaaaactcc |
461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0830 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0830
Description:
Target: scaffold0830; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 141 - 189
Target Start/End: Complemental strand, 3229 - 3181
Alignment:
| Q |
141 |
ttagatcctatgtaaaactttctaagagaagtcatatttcccaaacatg |
189 |
Q |
| |
|
||||||||||||| || ||||||||| ||||||||||||||||||||| |
|
|
| T |
3229 |
ttagatcctatgtccaaatttctaagaaaagtcatatttcccaaacatg |
3181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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