View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7832_low_11 (Length: 513)
Name: NF7832_low_11
Description: NF7832
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7832_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 16 - 495
Target Start/End: Complemental strand, 52393164 - 52392693
Alignment:
| Q |
16 |
atgaacaaaaacaactcacaacaaagcagaagacaaaagcccaaaccgtagcacatgactagaaaaatccagaaaacacgatcctttgtttaggaaaagg |
115 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52393164 |
atgaacaaaaacaactcacaacaaagcagcagacaaaagcccaaaccgtagcacatgactagaaaaatccagaaaacacgatcctttgtttaggaaaagg |
52393065 |
T |
|
| Q |
116 |
aaaaaacaatttttgttatgttaattaaatttaatactgaatttcctatatttacaatacatcttagaatccgttccccnnnnnnnnnnnnnnnnnttgg |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| |
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| T |
52393064 |
aaaaaacaatttttgttatgttaattaaatttaatactgaatttcctatatttacaatacatcttagaatccgttctcc---ttattattatttttttgg |
52392968 |
T |
|
| Q |
216 |
tacagacatttcccttatatgtgttgagtaaatatagaaaaataaataccaaaaccttatggataaattaacattattcaatgcagaattataagtggca |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52392967 |
tacagacatttcccttatatgtgttgagtaaatatagaaaaataaataccaaaaccttatggataaattaacattattcaatgcagaattataagtggca |
52392868 |
T |
|
| Q |
316 |
aaataaaattagcgcccatataccaaccaaaccaacaattacattcgtgtcaccttnnnnnnnnnnnnnnnngaaattacattcatggatatgttacatt |
415 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||| ||||||| |||||||||||||||||||||||||||| |
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| T |
52392867 |
aaataaaattagcgcccatatacc-----aaccaacaattacattcgggtcacctgaaaacaaaacaaaaaagaaattacattcatggatatgttacatt |
52392773 |
T |
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| Q |
416 |
tatgtaaagggtggaattagatttagatagatcattcagatcaagcactaattccatgtcctgtgtttaattttgatgat |
495 |
Q |
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| T |
52392772 |
tatgtaaagggtggaattagatttagatagatcattcagatcaagcactaattccatgtcctgtgtttaattttgatgat |
52392693 |
T |
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