View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7832_low_13 (Length: 475)
Name: NF7832_low_13
Description: NF7832
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7832_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 248; Significance: 1e-137; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 36 - 313
Target Start/End: Complemental strand, 41023740 - 41023462
Alignment:
| Q |
36 |
atgatgtcatgttttggtcaattgtttaattaatttgggacactcgagttgcaacttctccaaagtagcttcacaattctttgaaaggttactgacatat |
135 |
Q |
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| T |
41023740 |
atgatgtcatgttttggtcaattgtttaattaatttgggacactcgagttgcaacttctccaaagtagcttcacaattctttgaaaggttactgacatat |
41023641 |
T |
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| Q |
136 |
gcatggccctcatttcttctctt---tatatttggagcacaaacattacatttcaatttcacctcaatacatagaaagagtctagttgtgttttgtggtt |
232 |
Q |
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| T |
41023640 |
gcatggccctcatttcttctcttctttatatttggagcacaaacattacatttcaatttcacctcaatacataaagagagtctagttgtgttttgtggtt |
41023541 |
T |
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| Q |
233 |
cttattcaagctccaacaattgaggagcaccacaccaagaaacacatagctagcatatatactcaaattaattctctgtcc |
313 |
Q |
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| T |
41023540 |
cttattcaagctccaacaattgaggagcaccacaccaagaaacacatagctagca--tatactcaaattaattctctgtcc |
41023462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 357 - 455
Target Start/End: Complemental strand, 41023418 - 41023321
Alignment:
| Q |
357 |
gaactttgtgataaaaacattaggaaaattaaatggagtctaagattaagactttagaagtgcttccatttataattatggtgattatggaagggtgca |
455 |
Q |
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| T |
41023418 |
gaactttgtgataaaaacattaggaaaat-aaatggagtctaagattaagactttagaagtgcttccattcataattatggtgattatggaagggtgca |
41023321 |
T |
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