View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7832_low_18 (Length: 424)

Name: NF7832_low_18
Description: NF7832
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7832_low_18
NF7832_low_18
[»] chr2 (1 HSPs)
chr2 (11-413)||(15355823-15356224)
[»] scaffold0049 (1 HSPs)
scaffold0049 (351-407)||(71153-71209)
[»] chr6 (1 HSPs)
chr6 (351-407)||(23947150-23947206)
[»] chr5 (3 HSPs)
chr5 (351-407)||(34881907-34881963)
chr5 (351-407)||(37985966-37986022)
chr5 (351-407)||(42580078-42580134)
[»] chr4 (2 HSPs)
chr4 (351-407)||(9528710-9528766)
chr4 (351-407)||(35261392-35261448)
[»] chr3 (2 HSPs)
chr3 (343-407)||(35175575-35175639)
chr3 (351-407)||(46934824-46934880)
[»] chr1 (1 HSPs)
chr1 (351-407)||(26535519-26535575)


Alignment Details
Target: chr2 (Bit Score: 375; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 11 - 413
Target Start/End: Complemental strand, 15356224 - 15355823
Alignment:
Q  11 gtgttaatttatggtgtaattatattaaataaaactttttcatttgcaaaaagactcaaatccaaaacttacgacagaaatggattatctacatctgcaa 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  15356224 gtgttaatttatggtgtaattatattaaataaaactttttcatttgcaaaa-gactcaaatccaaaacttacgacagaaatggattatctacatctgcaa 15356126  T
Q  111 aatggtacggtatagttgtattgtaatagttggctcatagattggtacttctgtccggttttatcacattttcttcattgtaatgcaggcttgctcgtcg 210  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  15356125 aatggtacggtatagttgtattgtaatagttggctcatagattggtacttctgtccggttttatcacattttcttcattgtaatgcaggcttgctcgttg 15356026  T
Q  211 tcgtaatgtgatattgtttgaatttaccgtcttattgtagtgtttgtttggtgcaacttgacatatcaacttcgataaatttcagattcaatcaatgaca 310  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  15356025 tcgtaatgcgatattgtttgaatttaccgtcttattgtagtgtttgtttggtgcaacttgacatattaacttcgataaatttcagattcaatcaatgaca 15355926  T
Q  311 taatcgtcaatgctgcagatctgaagatatgctgtcattttatgctattaacttgaatgttgttggtttgtttgtagattgatcgtttaagtttttaatg 410  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  15355925 taatcgtcaatgctgcagatctgaagatatgttgtcattttatgctattaacttgaatgttgttggtttgtttgtagattgatcgtttaagtttttaaag 15355826  T
Q  411 atg 413  Q
    |||    
T  15355825 atg 15355823  T

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Target: scaffold0049 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 351 - 407
Target Start/End: Complemental strand, 71209 - 71153
Alignment:
Q  351 tatgctattaacttgaatgttgttggtttgtttgtagattgatcgtttaagttttta 407  Q
    |||||||||||||||  ||||||  ||||||||||||||| ||| |||| |||||||    
T  71209 tatgctattaacttgggtgttgtaagtttgtttgtagattaatcctttacgttttta 71153  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 351 - 407
Target Start/End: Complemental strand, 23947206 - 23947150
Alignment:
Q  351 tatgctattaacttgaatgttgttggtttgtttgtagattgatcgtttaagttttta 407  Q
    ||||||||||||||| |||||||  ||||||| ||||||| ||| |||| |||||||    
T  23947206 tatgctattaacttggatgttgtgagtttgttcgtagattcatcctttacgttttta 23947150  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 351 - 407
Target Start/End: Original strand, 34881907 - 34881963
Alignment:
Q  351 tatgctattaacttgaatgttgttggtttgtttgtagattgatcgtttaagttttta 407  Q
    ||||||||||||||| |||||||  ||||||||| ||||| ||| |||| |||||||    
T  34881907 tatgctattaacttggatgttgtgagtttgtttgcagattcatcctttatgttttta 34881963  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 351 - 407
Target Start/End: Complemental strand, 37986022 - 37985966
Alignment:
Q  351 tatgctattaacttgaatgttgttggtttgtttgtagattgatcgtttaagttttta 407  Q
    ||||||||||||||||||| |||  ||||||||| ||||| ||| |||| |||||||    
T  37986022 tatgctattaacttgaatgatgtgagtttgtttgcagattcatcttttacgttttta 37985966  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 351 - 407
Target Start/End: Original strand, 42580078 - 42580134
Alignment:
Q  351 tatgctattaacttgaatgttgttggtttgtttgtagattgatcgtttaagttttta 407  Q
    ||||||||||||||||||| |||  |||||||| |||||| ||| |||| |||||||    
T  42580078 tatgctattaacttgaatgctgtgagtttgtttatagattcatcctttacgttttta 42580134  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 351 - 407
Target Start/End: Complemental strand, 9528766 - 9528710
Alignment:
Q  351 tatgctattaacttgaatgttgttggtttgtttgtagattgatcgtttaagttttta 407  Q
    |||||||||||||||||||||||  ||||||| | ||||| ||| |||| |||||||    
T  9528766 tatgctattaacttgaatgttgtgagtttgttcgcagattcatcctttacgttttta 9528710  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 351 - 407
Target Start/End: Original strand, 35261392 - 35261448
Alignment:
Q  351 tatgctattaacttgaatgttgttggtttgtttgtagattgatcgtttaagttttta 407  Q
    ||||||||||||||| |||||||  ||||||||| ||||| ||| |||| |||||||    
T  35261392 tatgctattaacttggatgttgtgagtttgtttgcagattcatcctttacgttttta 35261448  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 343 - 407
Target Start/End: Original strand, 35175575 - 35175639
Alignment:
Q  343 tgtcattttatgctattaacttgaatgttgttggtttgtttgtagattgatcgtttaagttttta 407  Q
    ||||||| |||||||||||||||| ||||||  ||||||| | ||||| ||| |||| |||||||    
T  35175575 tgtcattgtatgctattaacttgagtgttgtgagtttgttcgcagattcatcttttacgttttta 35175639  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 351 - 407
Target Start/End: Original strand, 46934824 - 46934880
Alignment:
Q  351 tatgctattaacttgaatgttgttggtttgtttgtagattgatcgtttaagttttta 407  Q
    ||||||||||||||| |||||||  ||||||| ||||||| ||| |||| |||||||    
T  46934824 tatgctattaacttggatgttgtgagtttgttcgtagattcatcctttacgttttta 46934880  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 351 - 407
Target Start/End: Original strand, 26535519 - 26535575
Alignment:
Q  351 tatgctattaacttgaatgttgttggtttgtttgtagattgatcgtttaagttttta 407  Q
    |||||||||||||||| ||||||  ||||||| ||||||| ||| |||| |||||||    
T  26535519 tatgctattaacttgagtgttgtgagtttgttcgtagatttatcatttacgttttta 26535575  T

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