View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7832_low_21 (Length: 369)
Name: NF7832_low_21
Description: NF7832
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7832_low_21 |
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Alignment Details
Target: chr5 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 10 - 352
Target Start/End: Complemental strand, 31904075 - 31903733
Alignment:
| Q |
10 |
gcagagaaagagcaagttcgaattgacgggatgttacacacgctttgtggaacacctgcatatgtggcaccggagattttagcgaagagaggttatgatg |
109 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31904075 |
gcagtgaaagagcaagttcgaattgacgggatgttacacacgctttgtggaacacctgcatatgtggcaccggagattttagcgaagagaggttatgatg |
31903976 |
T |
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| Q |
110 |
gagctaaggtggatatttggtcatgtggtattatcctgtttgttcttgtggctggttatctaccatttaatgatccaaatttgatggtgatgtataggaa |
209 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
31903975 |
gagctaaggtggatatttggtcatgtggtattatactgtttgttcttgtggctggttatcttccatttaatgatccaaatttgatggtgatgtataggaa |
31903876 |
T |
|
| Q |
210 |
gatatatagcggggaatttaagtgtccgcggtggttttcaccggatctaaagcggtttttatcgcggttgatggatacaaatccggagacgaggataact |
309 |
Q |
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| T |
31903875 |
gatatatagtggggaatttaagtgtccgcggtggttttcaccggatctaaagcggtttttatcgcggttgatggatacaaatccggagacgaggataact |
31903776 |
T |
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| Q |
310 |
gttgatgagattttgagggatccttggtttagaaaagggtata |
352 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31903775 |
gttgatgagattttgagggatccttggtttagaaaagggtata |
31903733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 93 - 212
Target Start/End: Original strand, 4982573 - 4982692
Alignment:
| Q |
93 |
gaagagaggttatgatggagctaaggtggatatttggtcatgtggtattatcctgtttgttcttgtggctggttatctaccatttaatgatccaaatttg |
192 |
Q |
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||||| ||||||||||||||| |||| ||||||||||| |||||| |||| || |||||||| |||| |||| ||| || || |||||| |||||| |
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| T |
4982573 |
gaagaaaggttatgatggagccaaggcagatatttggtcttgtggtgttattctctttgttctattggcaggttttcttcctttcaatgatagaaattta |
4982672 |
T |
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| Q |
193 |
atggtgatgtataggaagat |
212 |
Q |
| |
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|||| |||||||| |||||| |
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| T |
4982673 |
atggagatgtataagaagat |
4982692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 53 - 254
Target Start/End: Complemental strand, 4956787 - 4956586
Alignment:
| Q |
53 |
tttgtggaacacctgcatatgtggcaccggagattttagcgaagagaggttatgatggagctaaggtggatatttggtcatgtggtattatcctgtttgt |
152 |
Q |
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||||||| || ||||| ||||| ||||| ||| |||| || | || |||||||||||| || ||||| ||| ||||||| |||||| || | ||||||| |
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| T |
4956787 |
tttgtggtactcctgcttatgttgcacctgaggttttggctaggaaaggttatgatggtgcaaaggttgatctttggtcttgtggtgttgttttgtttgt |
4956688 |
T |
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| Q |
153 |
tcttgtggctggttatctaccatttaatgatccaaatttgatggtgatgtataggaagatatatagcggggaatttaagtgtccgcggtggttttcaccg |
252 |
Q |
| |
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| | ||||||||||| |||| ||| |||||| |||| | |||| ||||||| |||||| || | || || ||| |||||| |||||||||||||| |
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| T |
4956687 |
tttgatggctggttatttaccttttcatgatcaaaatgttatggcaatgtataagaagatttacaagggtgagtttcggtgtcccaggtggttttcaccg |
4956588 |
T |
|
| Q |
253 |
ga |
254 |
Q |
| |
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|| |
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| T |
4956587 |
ga |
4956586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 52 - 209
Target Start/End: Complemental strand, 27312303 - 27312146
Alignment:
| Q |
52 |
ctttgtggaacacctgcatatgtggcaccggagattttagcgaagagaggttatgatggagctaaggtggatatttggtcatgtggtattatcctgtttg |
151 |
Q |
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||||||||||| ||||| || |||||||| ||| || | || ||| |||| |||||||| || || || ||| ||||||||||||| || | |||||| |
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| T |
27312303 |
ctttgtggaacccctgcttacgtggcacctgaggttcttgctaagcgaggatatgatggtgccaaagttgatgtttggtcatgtggcgttgttttgtttg |
27312204 |
T |
|
| Q |
152 |
ttcttgtggctggttatctaccatttaatgatccaaatttgatggtgatgtataggaa |
209 |
Q |
| |
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| |||| ||| || ||||| || |||||||||| |||||| ||||| |||||| |||| |
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| T |
27312203 |
tccttgcggcgggatatcttccttttaatgatcaaaatttaatggttatgtatcggaa |
27312146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 121 - 213
Target Start/End: Original strand, 27278953 - 27279045
Alignment:
| Q |
121 |
gatatttggtcatgtggtattatcctgtttgttcttgtggctggttatctaccatttaatgatccaaatttgatggtgatgtataggaagata |
213 |
Q |
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||||||||||| ||||| || | ||||||||| | |||| |||||||| || ||| |||| |||||||||| | |||||||||||||||| |
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| T |
27278953 |
gatatttggtcttgtggaatagttctgtttgttttattggcaggttatcttccttttcatgactcaaatttgatagagatgtataggaagata |
27279045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 53 - 185
Target Start/End: Original strand, 35828115 - 35828247
Alignment:
| Q |
53 |
tttgtggaacacctgcatatgtggcaccggagattttagcgaagagaggttatgatggagctaaggtggatatttggtcatgtggtattatcctgtttgt |
152 |
Q |
| |
|
||||||| |||||||| ||||| || || ||| |||| | | || |||||||||||| |||||||| ||||||||||| ||||| || | ||||||| |
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| T |
35828115 |
tttgtggtacacctgcttatgttgctcctgaggttttgtctaggaaaggttatgatggtgctaaggttgatatttggtcttgtggggttgttttgtttgt |
35828214 |
T |
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| Q |
153 |
tcttgtggctggttatctaccatttaatgatcc |
185 |
Q |
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| | ||||||||||| |||| ||| ||||||| |
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| T |
35828215 |
tttgatggctggttatttaccttttcatgatcc |
35828247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 281 - 321
Target Start/End: Complemental strand, 27043315 - 27043275
Alignment:
| Q |
281 |
tggatacaaatccggagacgaggataactgttgatgagatt |
321 |
Q |
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||||||||||||| |||||||||||| ||||||||||||| |
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| T |
27043315 |
tggatacaaatcccaagacgaggataagtgttgatgagatt |
27043275 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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