View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7832_low_22 (Length: 368)
Name: NF7832_low_22
Description: NF7832
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7832_low_22 |
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Alignment Details
Target: chr5 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 19 - 354
Target Start/End: Original strand, 29204978 - 29205313
Alignment:
| Q |
19 |
cattcgcaaagtatagttcacagagacttaaagccagataacttactgatcggacaagatggtcatattaaggttagtacatggattcgattcttttaca |
118 |
Q |
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| T |
29204978 |
cattcgcaaagcatagttcacagagacttaaagccagataacttactgatcggacaagatggtcatattaaggttagtacatggattcgattctcttaca |
29205077 |
T |
|
| Q |
119 |
tacttgtcccttcctcgtcactttttgtaaatgtttaatccttgttattacagttgacagactttggactctcaaaagttggtctcatcaacagcacgga |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29205078 |
tacttgtcccttcctcgtcactttttgtaaatgtttaatccttgttattacagttgacagactttggactctcaaaagttggtctcatcaacagcacgga |
29205177 |
T |
|
| Q |
219 |
ggatttatcagcacccgcatctttcactaatggttttttagtcgatgatgaaccaaaacctcgacatgtttcaaaaagggaggcacgtcaacaagaatca |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
29205178 |
ggatttatcagcacccgcatctttcactaatggttttttagtcgatgatgaaccaaaacctcgacatgtttcaaaaagggaggcacgtcaacaacaatca |
29205277 |
T |
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| Q |
319 |
atagttggcactccagattatttggcacccgaaata |
354 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
29205278 |
atagttggcactccagattatttggcacccgaaata |
29205313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 19 - 354
Target Start/End: Complemental strand, 12646898 - 12646562
Alignment:
| Q |
19 |
cattcgcaaagtatagttcacagagacttaaagccagataacttactgatcggacaagatggtcatattaaggttagta-catggattcgattcttttac |
117 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
12646898 |
cattcgcaaagtataattcacagagacttaaagccagataacttactgatcggacaagatggtcatattaaggttagtatcatggattcgattcttttac |
12646799 |
T |
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| Q |
118 |
atacttgtcccttcctcgtcactttttgtaaatgtttaatccttgttattacagttgacagactttggactctcaaaagttggtctcatcaacagcacgg |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12646798 |
atacttgtcccttcctcgtcactttttgtaaatgtttaatccttgttattacagttgacagactttggactctcaaaagttggtctcatcaacagcacgg |
12646699 |
T |
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| Q |
218 |
aggatttatcagcacccgcatctttcactaatggttttttagtcgatgatgaaccaaaacctcgacatgtttcaaaaagggaggcacgtcaacaagaatc |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
12646698 |
aggatttatcagcacccgcatctttcactaatggttttttagtcgatgatgaaccaaaacctcgacatgtttcaaaaagggaggcacgtcaacaacaatc |
12646599 |
T |
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| Q |
318 |
aatagttggcactccagattatttggcacccgaaata |
354 |
Q |
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| T |
12646598 |
aatagttggcactccagattatttggcacccgaaata |
12646562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 169 - 224
Target Start/End: Original strand, 25381688 - 25381743
Alignment:
| Q |
169 |
cagttgacagactttggactctcaaaagttggtctcatcaacagcacggaggattt |
224 |
Q |
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||||| ||||||||||| || ||||||||||||||||||||||||||||| ||||| |
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| T |
25381688 |
cagttaacagactttgggctttcaaaagttggtctcatcaacagcacggatgattt |
25381743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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