View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7832_low_28 (Length: 313)
Name: NF7832_low_28
Description: NF7832
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7832_low_28 |
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Alignment Details
Target: chr3 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 1 - 306
Target Start/End: Original strand, 55059712 - 55060017
Alignment:
| Q |
1 |
aattccaaaaacaatataaaataaatccccctaatcttatataagatttatctaacttgcaaaataagaaaattccaaatatcagatcctaagatacgac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||| |
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| T |
55059712 |
aattccaaaaacaatataaaataaatccccctaatcttatataagatttatctaacttgccaaataaaaaaattccaaatatcagatcctaagatacgac |
55059811 |
T |
|
| Q |
101 |
caacaaataggtattaagaattggccagcttcagaatccaaatttctgaattagctgaaataaaatattgtagtcagatgatagtttctctagacattta |
200 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55059812 |
caacaaataggtattaagaattggccagctccagaatccaaatttctgaattagctgaaataaaatattgtagtcagatgatagtttctctagacattta |
55059911 |
T |
|
| Q |
201 |
tgtgcccagtgtccactattaagttataccttgtataatgtggtgcctatatactacaaaatcacacacagaacaattgtgatcagactccaacaatctt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55059912 |
tgtgcccagtgtccactattaagttataccttgtataatgtggtgcctatatactacaaaatcacacacagaacaattgtgatcagactccaacaatctt |
55060011 |
T |
|
| Q |
301 |
cttctc |
306 |
Q |
| |
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| |||| |
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| T |
55060012 |
catctc |
55060017 |
T |
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