View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7832_low_7 (Length: 577)
Name: NF7832_low_7
Description: NF7832
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7832_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 319; Significance: 1e-180; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 15 - 333
Target Start/End: Complemental strand, 6027992 - 6027674
Alignment:
| Q |
15 |
ggacatcaattgattgagcttgtgaaagaaatggctgtgttaggtggtaagttcaatttgggagatatgttatggtttgttaagaagcttgatttgcaag |
114 |
Q |
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| T |
6027992 |
ggacatcaattgattgagcttgtgaaagaaatggctgtgttaggtggtaagttcaatttgggagatatgttatggtttgttaagaagcttgatttgcaag |
6027893 |
T |
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| Q |
115 |
ggtttggtaaaaggctagagaatcttagaaataggtatgatgttataatagagaggatcatgaaggaacatgaagatacaaagaagaaaaacaaggagga |
214 |
Q |
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| T |
6027892 |
ggtttggtaaaaggctagagaatcttagaaataggtatgatgttataatagagaggatcatgaaggaacatgaagatacaaagaagaaaaacaaggagga |
6027793 |
T |
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| Q |
215 |
aataaatagtaatggaattgaaacagtgagtgatttgcttgatattttacttgatatctatgctgatgaaaactcagaggttagattaactagagaaaat |
314 |
Q |
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| T |
6027792 |
aataaatagtaatggaattgaaacagtgagtgatttgcttgatattttacttgatatctatgctgatgaaaactcagaggttagattaactagagaaaat |
6027693 |
T |
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| Q |
315 |
atcaaggccttcatcatgg |
333 |
Q |
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| T |
6027692 |
atcaaggccttcatcatgg |
6027674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 453 - 560
Target Start/End: Complemental strand, 6027554 - 6027447
Alignment:
| Q |
453 |
gttgttcttaaagatcagtataatatgtctccacaagtataactcagttgacatagacaatacattgttaaatgcatgggtcggggttcctactcaggat |
552 |
Q |
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| T |
6027554 |
gttgttcttaaagatcagtataatatgtctccacaagtataactcagttgacacaaacaatacattgttaaatgcatgggtcggggttcctactcaggat |
6027455 |
T |
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| Q |
553 |
acaccact |
560 |
Q |
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| T |
6027454 |
acaccact |
6027447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 490 - 518
Target Start/End: Original strand, 39201318 - 39201346
Alignment:
| Q |
490 |
tataactcagttgacatagacaatacatt |
518 |
Q |
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| T |
39201318 |
tataactcagttgacatagacaatacatt |
39201346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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