View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7832_low_9 (Length: 536)
Name: NF7832_low_9
Description: NF7832
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7832_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 418; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 15 - 518
Target Start/End: Complemental strand, 53603867 - 53603351
Alignment:
| Q |
15 |
gagatgaacttgtaaattgtaattagcaatagagtagcaaaagacatacccatgaggaccatgctatgctgtaaatgaacatctgcattcaatttgatag |
114 |
Q |
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| T |
53603867 |
gagatgaacttgtaaattgtaattagcaatagagtagcaaaagacatacccatgaggaccatgctatgctgtaaatgaacatctgcattcaatttgatag |
53603768 |
T |
|
| Q |
115 |
cactaatttagaatttacaaaaatgtgtannnnnnnnn--acttataaaattacaaagggataaatgcttacatgtacacagtgaaaaaagagtccaatc |
212 |
Q |
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| T |
53603767 |
cactaatttagaatttacaaaaatgtgtatttttttttttacttataaaattacaaaaggataaatgcttacatgtacacagtgaaaaaagagtccaatc |
53603668 |
T |
|
| Q |
213 |
gatagaagccttgcctcgcccaaagtaggagcaaaaataggcataagaaaaagctgtgatcaacaatgtttgataattaatattt-acaataaactcaaa |
311 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| |
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| T |
53603667 |
gatagaagccttgcctcgcccaaagtaggagcaaaaataggcataagaaaaagctgtgatcaacaatgtttgata-ttaatattttacaataaactcaaa |
53603569 |
T |
|
| Q |
312 |
caaattgtagatttgacaagacaaaac-----------ataggtgatatttgacaactaaaatcacttcttacaaaaattacctgtgacacagtccctgc |
400 |
Q |
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| T |
53603568 |
caaattgtagatttgacaagacaaaacgtaaactaaacataggtgatatttgacaactaaaatcacgtcttacaaaaattacctgtgacacagtccctgc |
53603469 |
T |
|
| Q |
401 |
aataccagaaatgatcattaagtcagcaaagtgattcttatcaaaatgaaaccgagcctttaagtaatactgcacacaaaaaatagagtggcatcacaaa |
500 |
Q |
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| T |
53603468 |
aataccagaaatgatcattaagtcagcaaagtgattcttatcaaaatgaaaccgagcctttaagtaatactgcacacaaaaaatagagtggcatcacaaa |
53603369 |
T |
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| Q |
501 |
ctaagttaaggttaaaaa |
518 |
Q |
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| T |
53603368 |
ctaagttaaggttaaaaa |
53603351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 69; Significance: 1e-30; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 38 - 130
Target Start/End: Original strand, 39170530 - 39170622
Alignment:
| Q |
38 |
tagcaatagagtagcaaaagacatacccatgaggaccatgctatgctgtaaatgaacatctgcattcaatttgatagcactaatttagaattt |
130 |
Q |
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||||||||||||||| ||||||||||||| |||||||||||||| |||||||||||||||| |||||||||||||| |||||||||| ||||| |
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| T |
39170530 |
tagcaatagagtagctaaagacatacccaagaggaccatgctatactgtaaatgaacatctacattcaatttgataacactaatttataattt |
39170622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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