View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7833_low_1 (Length: 635)
Name: NF7833_low_1
Description: NF7833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7833_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 536; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 536; E-Value: 0
Query Start/End: Original strand, 18 - 619
Target Start/End: Original strand, 2006987 - 2007590
Alignment:
| Q |
18 |
taatggatctagactctgttaactcttctggattttatttatgtaaccttttcatataactcctcctagctctttgtccttttcttttcttatttatgta |
117 |
Q |
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| T |
2006987 |
taatggatctagactctgttgactcttctggattttatttatgtaaccttttcatataactcctcctagctctttgtccttttcttttcttatttatgta |
2007086 |
T |
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| Q |
118 |
accttttcgattgtttcctatagacatgaaaattagagagaaagaaaggaattgcttttgaatgcatcactattgttgaagttactttgttttgtgctag |
217 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2007087 |
accttttcgattgtttcctatagaaatgaaaattagagagaaagaaaggaattgcttttgaatgcatcactattgttgaagttactttgttttgtgctag |
2007186 |
T |
|
| Q |
218 |
ttttatttagtacagtgactgtaatccactgggcattgaggatttgttgtgtgataggcatagttagaacgtgttttcttttttgctgccaaaatacttt |
317 |
Q |
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| T |
2007187 |
ttttaattagtacagtgactgtaatccactgggcattgaggatttgttgtgtgataggcatagttagaacgtgttttcttttttgctgccaaaatacttt |
2007286 |
T |
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| Q |
318 |
taatcattgcctattatttttcagttaagcatctcgcgcaaaactctgcagcattatgtttttcccatcgttcgttttgttcggaannnnnnnacattgg |
417 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| |||||||| ||||||| |
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| T |
2007287 |
taatcattgcctattatttttcagttaagcatctcgtgcaaaactctgcagcattatgcttttcccatcgttcgtttcgttcggaatttttttacattgg |
2007386 |
T |
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| Q |
418 |
gatacaatttgtatttctgttactggc--tatgttatccgggacattttggaactttgctcttcttgttaagagtttatcttcgttttatgttgaggggc |
515 |
Q |
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||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2007387 |
gatacaatttgtatttctgttactgtctttatgttatccgggacattttggaactttgctcttcttgttaagagtttatcttcgttttatgttgaggggc |
2007486 |
T |
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| Q |
516 |
tctgcctctatctatgcaccgagactcttctttcatgcgattgaaactgatgactttgaaaatttaaatgcctgtagagaaggggacaaactttgtttta |
615 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
2007487 |
tctgcctctatctatgcaccgagagtcttctttcatgcgattgaaactgatgactttgaaaatttaaatgcctatagagaaggggacaaactttgtttta |
2007586 |
T |
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| Q |
616 |
tgtt |
619 |
Q |
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|||| |
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| T |
2007587 |
tgtt |
2007590 |
T |
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