View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7833_low_2 (Length: 540)
Name: NF7833_low_2
Description: NF7833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7833_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 484; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 484; E-Value: 0
Query Start/End: Original strand, 13 - 524
Target Start/End: Original strand, 49300858 - 49301369
Alignment:
| Q |
13 |
aatatatattgcatagagtttcactaaaacattccatattttaatccatcatgggccatggcaatcccaaatcatagccagaacagaataccttgttgta |
112 |
Q |
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| T |
49300858 |
aatatacattgcatagagtttcactaaaacattccatattttaatccatcatgggccatggcaatcccaaatcatagccagaacagaataccttgttgta |
49300957 |
T |
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| Q |
113 |
cataaccgttggaaatttactgaagattcaaaaccaattttaatgaattaaccgaagttttatttttactaccatctaccaagtatcataatttatcatg |
212 |
Q |
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| T |
49300958 |
cataaccattggaaatttactgaagattcaaaaccaattttaatgaattaaccgaagttttatttttactaccatctaccaagtatcataatttatcatg |
49301057 |
T |
|
| Q |
213 |
gcataaataacataataactagtacacacttaacatgtgacaggggagaggtacttgaaattgacacatgggttggagcatcgggaaagaatggtatgcg |
312 |
Q |
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||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49301058 |
gcataaataacataataacaagtacagacttaacatgtgacaggggagaggtacttgaaattgacacatgggttggagcatcgggaaagaatggtatgcg |
49301157 |
T |
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| Q |
313 |
acgagactggctcataaggagtcaagccacgggccaaatttttgctcgtgcaacaaggtattgtatacatatatactacctatgtccctttttataagca |
412 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
49301158 |
acgagactggctcataaggagtcaagccacgggccatatttttgctcgtgcaacaaggtattgtatacatatataatacctatgtccctttttataagca |
49301257 |
T |
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| Q |
413 |
cttttttgttctcgcaaaaatgtacttgcaaaaaaggacagaggtaatactagtctagcacaatttcgcaaacattctttaaacccttttcataagtatt |
512 |
Q |
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| T |
49301258 |
cctttttgttctcgcaaaaatgtacttgcaaaaaaggacagaggtaatactagtctagcacaatttcgcaaacattctttaaacccttttcataagtatt |
49301357 |
T |
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| Q |
513 |
ttgactgatatt |
524 |
Q |
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|||||||||||| |
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| T |
49301358 |
ttgactgatatt |
49301369 |
T |
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