View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7833_low_3 (Length: 440)
Name: NF7833_low_3
Description: NF7833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7833_low_3 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 385; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 15 - 440
Target Start/End: Complemental strand, 5994934 - 5994510
Alignment:
| Q |
15 |
gacatcagcctctacagcgacatcacaatggacgnnnnnnncattttctagatcacttaaggaatcaaagagcttctgtccaaggtcgtcttggatgtcg |
114 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5994934 |
gacatcagcctctacagcgacatcacaatggacgaaaaaaacattttctagatcacttaaggaatcaaagagcttctgtccaaggtcgtcttggatgtcg |
5994835 |
T |
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| Q |
115 |
gctatacatactttagcaccgtgggtgtggaataggcgaacgatgctttctccaattccggaggctccaccagttaccacagcgactttacctaataatc |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5994834 |
gctatacatactttagcaccgtgggtgtggaataggcgaacgatgctttctccaattccggaggctccaccagttaccacagcgactttacctaataatc |
5994735 |
T |
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| Q |
215 |
tgagggagatataaagcagagaactttaactcaaatgattgaaatattgagagtggttaacaataattgaaaacttaaagaaaacattattattatagaa |
314 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5994734 |
tgagggagatataaagcagagaactttagctcaaatgattgaaatattgagagtggttaacaataattgaaaacttaaagaaaacattattattatagaa |
5994635 |
T |
|
| Q |
315 |
tgtgtcattgtgtgacagataaacatgactaaaaccagaatccataattcagaaatcagtgatatggaaagaaaacagctaaatatctctagatcttttt |
414 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
5994634 |
tgtgtcattgtgtgacagataaacatgaccaaaaccagaatccataattcagaaatcagtgatatggaaagaaaacagctaaatatttctagatcttttt |
5994535 |
T |
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| Q |
415 |
ccacttgtaaaagacagtgttttccc |
440 |
Q |
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| T |
5994534 |
-cacttgtaaaagacagtgttttccc |
5994510 |
T |
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