View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7833_low_6 (Length: 246)
Name: NF7833_low_6
Description: NF7833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7833_low_6 |
 | |
|
| [»] chr3 (2 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 4 - 246
Target Start/End: Original strand, 29638670 - 29638912
Alignment:
| Q |
4 |
aaattgcttggtgctgttgacctagtgatgaatgcacgtcaagtgtgtcctatgtggagggaaatttgtagggaacctctcatgtggaggagcattgcaa |
103 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||| |||||||| || |
|
|
| T |
29638670 |
aaattgcttggtgctgttgacctagtgatgaatgcacgtctagtgtgtcctatgtggagggaaatttgtagggatcctctcatgtggaagagcattgaaa |
29638769 |
T |
|
| Q |
104 |
tgatcaatggactccattcaccacataacttggggaagctttgtatgtttgcagttgatcaaggtggtgctcatgtggaagaaattactgttgagtattt |
203 |
Q |
| |
|
|||||||||| |||||||||||||||||||||| |||| ||||||||| ||| |||||||||||||||| ||||||||||||||||| |||||||||||| |
|
|
| T |
29638770 |
tgatcaatggtctccattcaccacataacttggagaagatttgtatgtatgctgttgatcaaggtggtgatcatgtggaagaaattaatgttgagtattt |
29638869 |
T |
|
| Q |
204 |
tgttactgttgatcttatcacacgattagctggaaggtaatac |
246 |
Q |
| |
|
|||||||| ||||||||||| ||||||||||| |||||||||| |
|
|
| T |
29638870 |
tgttactgatgatcttatcagacgattagctgaaaggtaatac |
29638912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 4 - 246
Target Start/End: Original strand, 29646615 - 29646857
Alignment:
| Q |
4 |
aaattgcttggtgctgttgacctagtgatgaatgcacgtcaagtgtgtcctatgtggagggaaatttgtagggaacctctcatgtggaggagcattgcaa |
103 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||| |||||||| || |
|
|
| T |
29646615 |
aaattgcttggtgctgttgacctagtgatgaatgcacgtctagtgtgtcctatgtggagggaaatttgtagggatcctctcatgtggaagagcattgaaa |
29646714 |
T |
|
| Q |
104 |
tgatcaatggactccattcaccacataacttggggaagctttgtatgtttgcagttgatcaaggtggtgctcatgtggaagaaattactgttgagtattt |
203 |
Q |
| |
|
|||||||||| |||||||||||||||||||||| |||| ||||||||| ||| |||||||||||||||| ||||||||||||||||| |||||||||||| |
|
|
| T |
29646715 |
tgatcaatggtctccattcaccacataacttggagaagatttgtatgtatgctgttgatcaaggtggtgatcatgtggaagaaattaatgttgagtattt |
29646814 |
T |
|
| Q |
204 |
tgttactgttgatcttatcacacgattagctggaaggtaatac |
246 |
Q |
| |
|
|||||||| ||||||||||| ||||||||||| |||||||||| |
|
|
| T |
29646815 |
tgttactgatgatcttatcagacgattagctgaaaggtaatac |
29646857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University