View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7834_low_1 (Length: 226)
Name: NF7834_low_1
Description: NF7834
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7834_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 166; Significance: 5e-89; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 13 - 203
Target Start/End: Complemental strand, 26454988 - 26454798
Alignment:
| Q |
13 |
ataatacttgagaaaccaaaacaactttgggaaccnnnnnnncagcaatgtaaggagaaggctttcggaggtgataagtgtagcttcgaagaagcatgat |
112 |
Q |
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| T |
26454988 |
ataatacttgagaaaccaaaacaactttgggaaccaaaaaaacagcaatgtaaggagaaggctttcggaggtgataagcgtagcttcgaagaagcatgat |
26454889 |
T |
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| Q |
113 |
ggctatcaaagtctttccacaaccagtctccaagtacactatagtattttcgcgaatcgctttatccaatgcttcaagttgatagctacac |
203 |
Q |
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| T |
26454888 |
ggctatcaaagtctttccacaaccagtctccaagtacactatagtattttcgcgaatcgctttatccaatgcttcaagttgatagctacac |
26454798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 13 - 196
Target Start/End: Complemental strand, 26446810 - 26446627
Alignment:
| Q |
13 |
ataatacttgagaaaccaaaacaactttgggaaccnnnnnnncagcaatgtaaggagaaggctttcggaggtgataagtgtagcttcgaagaagcatgat |
112 |
Q |
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| T |
26446810 |
ataatacttgagaaaccaaaacaactttgggaataaaaaaaatagcaatgtaaggagaaggctttcggaggtgataagcgtagcttcaaagaagcatgat |
26446711 |
T |
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| Q |
113 |
ggctatcaaagtctttccacaaccagtctccaagtacactatagtattttcgcgaatcgctttatccaatgcttcaagttgata |
196 |
Q |
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| T |
26446710 |
ggctatcaaagtctttccacgaccaatctccaagtacactatagtattttcgcgaatcgctttatccaatgcttcaagttgata |
26446627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 74 - 203
Target Start/End: Original strand, 26448801 - 26448936
Alignment:
| Q |
74 |
ctttcggaggtgataagtgtagcttcgaagaagcatgatggctatcaaagtctttccacaaccagtctccaagtacactatagtattttcgcgaatcgct |
173 |
Q |
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| T |
26448801 |
ctttcagaggtgataagcgtagcttcaaagaagcatgatggctatcaaagtctctccacaaccaggctccaagtacactatagtattttcacgaatcact |
26448900 |
T |
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| Q |
174 |
ttatcc------aatgcttcaagttgatagctacac |
203 |
Q |
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|||||| ||||||| |||||||||||||||| |
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| T |
26448901 |
ttatccatggaaaatgctttaagttgatagctacac |
26448936 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 145; Significance: 2e-76; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 13 - 202
Target Start/End: Complemental strand, 29673883 - 29673694
Alignment:
| Q |
13 |
ataatacttgagaaaccaaaacaactttgggaaccnnnnnnncagcaatgtaaggagaaggctttcggaggtgataagtgtagcttcgaagaagcatgat |
112 |
Q |
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|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
29673883 |
ataatacttgagaaaccaaaacaactttgggaaccaaaaaaacagcaatgtaaggagaaggctttcggaggtgataagcgtagcttcgaagaagcatgat |
29673784 |
T |
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| Q |
113 |
ggctatcaaagtctttccacaaccagtctccaagtacactatagtattttcgcgaatcgctttatccaatgcttcaagttgatagctaca |
202 |
Q |
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|||||||||||||||||||||||||||||| ||||| ||||||||||||||||| || ||||||||||||||||||||||| |||||||| |
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| T |
29673783 |
ggctatcaaagtctttccacaaccagtctctaagtaaactatagtattttcgcggattgctttatccaatgcttcaagttggtagctaca |
29673694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 136; Significance: 4e-71; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 16 - 200
Target Start/End: Original strand, 11495509 - 11495693
Alignment:
| Q |
16 |
atacttgagaaaccaaaacaactttgggaaccnnnnnnncagcaatgtaaggagaaggctttcggaggtgataagtgtagcttcgaagaagcatgatggc |
115 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
11495509 |
atacttgagaaaccaaaacaactttgggaaccaaaaacacagcaatgtaaggagaaggctttcggaggtgataagcgtagcttcgaagaagcatgatggc |
11495608 |
T |
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| Q |
116 |
tatcaaagtctttccacaaccagtctccaagtacactatagtattttcgcgaatcgctttatccaatgcttcaagttgatagcta |
200 |
Q |
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|||||||||||||||| |||||||||||||||||||||| |||||||| || |||||||| |||||||||||||| ||||||||| |
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| T |
11495609 |
tatcaaagtctttccagaaccagtctccaagtacactatggtattttcacggatcgctttttccaatgcttcaagctgatagcta |
11495693 |
T |
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