View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7834_low_2 (Length: 509)
Name: NF7834_low_2
Description: NF7834
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7834_low_2 |
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| [»] scaffold0015 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 408; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 25 - 496
Target Start/End: Complemental strand, 33386136 - 33385664
Alignment:
| Q |
25 |
cctctgtatttatcaattgttccatatggttttagtttcttttcaaaatttgtttataacctatagaattgcaataagaaggcaagtgtactaaatttca |
124 |
Q |
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| T |
33386136 |
cctctgtatttatcaattgttccatatgtttttagtttcttttcaaaatttgtttataacctatagaattgcaataagaaggcaagtgtactaaatttca |
33386037 |
T |
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| Q |
125 |
ggtcttgttacactctacagaatccatcccattatttatgaactcttgccactaatatgcatcaaaagaagacaaaagttcttggaggtttgctggatcc |
224 |
Q |
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| T |
33386036 |
ggtcttgttacactctacagaatccatcccattatttatgaactcttgccactaatatgcatcaaaagaagacaaaacttcttggaggtttgctggatcc |
33385937 |
T |
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| Q |
225 |
tcctataatgtatagaccatgtaattggactcttgccagcttcatgtttgattacgatcttcttgtacacctttaggcatgtttcttccatcaattattt |
324 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33385936 |
tcctataatgtatagaccatgtaattggactcttgccagcttcatgtttgattatgatcttcttgtacacctttaggcatgtttcttccatcaattattt |
33385837 |
T |
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| Q |
325 |
tggtgnnnnnnnaatctctgctttttatgtcaatctaatttgcttatgatctttagaacttcaatcttttgcatctcttgacttgcaattatgatctacc |
424 |
Q |
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| T |
33385836 |
tggtgttttttgaatcattgctttttatgtcattctaatttgcttatgatctttataacttcaatcttttgcatctcttgacttgcaattatgatctacc |
33385737 |
T |
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| Q |
425 |
taatcagcaacctttagtacagttgatttccaatta-ttttttcaaaaagattgatcttgacttatgagatga |
496 |
Q |
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| T |
33385736 |
taatctgcaacctttagtacaattgatttccaattatttttttcaaaaagattgatcttgacttatgagatga |
33385664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 364 - 496
Target Start/End: Complemental strand, 17631067 - 17630935
Alignment:
| Q |
364 |
ttgcttatgatctttagaacttcaatcttttgcatctcttgacttgcaattatgatctacctaatcagcaacctttagtacagttgatttccaattattt |
463 |
Q |
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| T |
17631067 |
ttgcttttgatctttagaatttcaatcatttgcaacctttgacttaatattctaatctacctaattcataacctaaagtacgcttgattttctatttttt |
17630968 |
T |
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| Q |
464 |
tttcaaaaagattgatcttgacttatgagatga |
496 |
Q |
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| T |
17630967 |
cttcaaaaacgttgatcttgacttatgagatga |
17630935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 53 - 82
Target Start/End: Complemental strand, 33386981 - 33386952
Alignment:
| Q |
53 |
gttttagtttcttttcaaaatttgtttata |
82 |
Q |
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| T |
33386981 |
gttttagtttcttttcaaaatttgtttata |
33386952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 365 - 496
Target Start/End: Original strand, 19411831 - 19411962
Alignment:
| Q |
365 |
tgcttatgatctttagaacttcaatcttttgcatctcttgacttgcaattatgatctacctaatcagcaacctttagtacagttgatttccaattatttt |
464 |
Q |
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||||| ||||||||||||||||||||||||| ||| ||| ||||| |||| | |||||||| ||| | | ||| || ||| |||||||||| | ||| |
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| T |
19411831 |
tgcttttgatctttagaacttcaatcttttgaatcccttaacttgaaattctaatctacctgatctgtatcctcaagcacaattgatttccattcctttc |
19411930 |
T |
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| Q |
465 |
ttcaaaaagattgatcttgacttatgagatga |
496 |
Q |
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| T |
19411931 |
atcaaaaagcttgatcttgacttttgagatga |
19411962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0015 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: scaffold0015
Description:
Target: scaffold0015; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 337 - 437
Target Start/End: Complemental strand, 55200 - 55101
Alignment:
| Q |
337 |
aatctctgctttttatgtcaatctaatttgcttatgatctttagaacttcaatcttttgcatctcttgacttgcaattatgatctacctaatcagcaacc |
436 |
Q |
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| T |
55200 |
aatctctgcttctaatgtcattctgatatgcttctgatctttagaacttcaaccctttgtatcccttgac-tgcaattctaatctacctgatctgcaacc |
55102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0015; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 337 - 437
Target Start/End: Original strand, 57638 - 57737
Alignment:
| Q |
337 |
aatctctgctttttatgtcaatctaatttgcttatgatctttagaacttcaatcttttgcatctcttgacttgcaattatgatctacctaatcagcaacc |
436 |
Q |
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| T |
57638 |
aatctctgcttctaatgtcattctgatatgcttctgatctttagaacttcaaccctttgtatcccttgac-tgcaattctaatctacctgatctgcaacc |
57736 |
T |
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