View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7835_high_3 (Length: 251)

Name: NF7835_high_3
Description: NF7835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7835_high_3
NF7835_high_3
[»] chr2 (11 HSPs)
chr2 (1-241)||(39139611-39139851)
chr2 (1-228)||(39471685-39471894)
chr2 (87-241)||(39412116-39412277)
chr2 (146-241)||(39154067-39154162)
chr2 (1-77)||(39452050-39452126)
chr2 (1-58)||(39420054-39420111)
chr2 (12-81)||(39204595-39204663)
chr2 (139-188)||(44749361-44749410)
chr2 (151-186)||(39451991-39452026)
chr2 (1-43)||(39179531-39179573)
chr2 (1-41)||(39156676-39156716)
[»] chr7 (1 HSPs)
chr7 (3-214)||(19809897-19810108)
[»] chr5 (2 HSPs)
chr5 (1-79)||(17060996-17061075)
chr5 (22-81)||(33563145-33563203)
[»] chr8 (1 HSPs)
chr8 (135-188)||(45343382-45343437)


Alignment Details
Target: chr2 (Bit Score: 233; Significance: 1e-129; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 39139851 - 39139611
Alignment:
Q  1 tcattttccacgcattaacaccaagatgtcaattttctcttaaaaaatgatagaactgttgggggaaacaaaatgaagccagctacatgagttccatttc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39139851 tcattttccacgcattaacaccaagatgtcaattttctcttaacaaatgatagaactgttgggggaaacaaaatgaagccagctacatgagttccatttc 39139752  T
Q  101 gtaccaagttaccaacatctaatatatcaatctgagtatctttgtatatatcctgcacagtttttacttatcatctaaaagtatttgaatttataaaatt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39139751 gtaccaagttaccaacatctaatatatcaatctgagtatctttgtatatatcctgcacagtttttacttatcatctaaaagtatttgaatttataaaatt 39139652  T
Q  201 tcaacatgagttgtcctatttcttaaaaggattcatctcac 241  Q
    |||||||||||||||||||||||||||||||||||| ||||    
T  39139651 tcaacatgagttgtcctatttcttaaaaggattcatttcac 39139611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 39471685 - 39471894
Alignment:
Q  1 tcattttccacgcattaacaccaagatgtcaattttctcttaaaaaatgatagaactgttgggggaaacaaaatgaagccagctacatgagttccatttc 100  Q
    ||||||||||  ||||||||||||||||||||||||||||||| |||||||||||||||| | ||| ||||||| ||||||  ||| ||||||| |||||    
T  39471685 tcattttccaatcattaacaccaagatgtcaattttctcttaacaaatgatagaactgttagcggacacaaaataaagccaattacgtgagttcaatttc 39471784  T
Q  101 gtaccaagttaccaacatctaatatatcaatctgagtatctttgtatatatcctgcacagtttttacttatcatctaaaagtatttgaatttataaaatt 200  Q
     ||||||||||| |||||||| ||||| |||||||                  |||| ||||| ||||||||||||||| |||||||||||| |||||||    
T  39471785 ataccaagttacaaacatctactatattaatctga------------------tgcatagtttgtacttatcatctaaatgtatttgaatttttaaaatt 39471866  T
Q  201 tcaacatgagttgtcctatttcttaaaa 228  Q
    |||| | |||||||||||||||||||||    
T  39471867 tcaaaaagagttgtcctatttcttaaaa 39471894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 87 - 241
Target Start/End: Original strand, 39412116 - 39412277
Alignment:
Q  87 atgagttccatttcgtaccaagttaccaacatctaatatatcaatctgagtatctttgtatatatcctgcacagtttttacttat-------catctaaa 179  Q
    |||||||| ||| | |||||||||||| | || |||||||| ||||| ||||||||||||||| ||||||| |||||||||||||       ||||||||    
T  39412116 atgagttcaattccataccaagttaccgagatataatatattaatcttagtatctttgtatatgtcctgcatagtttttacttatcagttatcatctaaa 39412215  T
Q  180 agtatttgaatttataaaatttcaacatgagttgtcctatttcttaaaaggattcatctcac 241  Q
    |||||||||||||||||||||  | || ||||||||||||||||||||||||||||| ||||    
T  39412216 agtatttgaatttataaaattaaaccaggagttgtcctatttcttaaaaggattcatttcac 39412277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 146 - 241
Target Start/End: Complemental strand, 39154162 - 39154067
Alignment:
Q  146 atatatcctgcacagtttttacttatcatctaaaagtatttgaatttataaaatttcaacatgagttgtcctatttcttaaaaggattcatctcac 241  Q
    |||||||||||| ||||||||||||||||||||| |||||||| ||||  |||||| |||| |||||||| |||||||||||| ||||||| ||||    
T  39154162 atatatcctgcatagtttttacttatcatctaaaggtatttgactttagcaaatttaaacaagagttgtcttatttcttaaaatgattcatttcac 39154067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 39452126 - 39452050
Alignment:
Q  1 tcattttccacgcattaacaccaagatgtcaattttctcttaaaaaatgatagaactgttgggggaaacaaaatgaa 77  Q
    |||||||||| |||||||||| ||||||||||||||| ||||| |||||| | ||| ||||||||||||||||||||    
T  39452126 tcattttccaagcattaacactaagatgtcaattttcccttaacaaatgagacaacagttgggggaaacaaaatgaa 39452050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 39420054 - 39420111
Alignment:
Q  1 tcattttccacgcattaacaccaagatgtcaattttctcttaaaaaatgatagaactg 58  Q
    ||||||| || |||||||||| ||||||||||||||||||||| |||||| |||||||    
T  39420054 tcattttacaagcattaacacaaagatgtcaattttctcttaacaaatgacagaactg 39420111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 12 - 81
Target Start/End: Original strand, 39204595 - 39204663
Alignment:
Q  12 gcattaacaccaagatgtcaattttctcttaaaaaatgatagaactgttgggggaaacaaaatgaagcca 81  Q
    ||||||| || ||||||||||||||||| ||| |||||  ||| ||||| ||||||||||||||||||||    
T  39204595 gcattaaaacgaagatgtcaattttctcgtaacaaatgtgagatctgtt-ggggaaacaaaatgaagcca 39204663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 139 - 188
Target Start/End: Original strand, 44749361 - 44749410
Alignment:
Q  139 tctttgtatatatcctgcacagtttttacttatcatctaaaagtatttga 188  Q
    ||||||||||| ||||||| |||| ||||||||||||||||| |||||||    
T  44749361 tctttgtatatttcctgcatagttcttacttatcatctaaaaatatttga 44749410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 151 - 186
Target Start/End: Complemental strand, 39452026 - 39451991
Alignment:
Q  151 tcctgcacagtttttacttatcatctaaaagtattt 186  Q
    ||||||| ||||||||||||||||||||||||||||    
T  39452026 tcctgcatagtttttacttatcatctaaaagtattt 39451991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 39179573 - 39179531
Alignment:
Q  1 tcattttccacgcattaacaccaagatgtcaattttctcttaa 43  Q
    |||||||| | ||||||| ||||||||||||||||||||||||    
T  39179573 tcattttcaaagcattaaaaccaagatgtcaattttctcttaa 39179531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 39156716 - 39156676
Alignment:
Q  1 tcattttccacgcattaacaccaagatgtcaattttctctt 41  Q
    |||||||||| |||||||||||||| |||||||||| ||||    
T  39156716 tcattttccaagcattaacaccaagttgtcaattttgtctt 39156676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 172; Significance: 2e-92; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 3 - 214
Target Start/End: Complemental strand, 19810108 - 19809897
Alignment:
Q  3 attttccacgcattaacaccaagatgtcaattttctcttaaaaaatgatagaactgttgggggaaacaaaatgaagccagctacatgagttccatttcgt 102  Q
    |||||||| |||||||||| | ||||||||||||||||||| |||||||||||||||| |||||||||||||||||||| ||||| ||||||||||||||    
T  19810108 attttccaagcattaacactatgatgtcaattttctcttaacaaatgatagaactgttaggggaaacaaaatgaagccaactacacgagttccatttcgt 19810009  T
Q  103 accaagttaccaacatctaatatatcaatctgagtatctttgtatatatcctgcacagtttttacttatcatctaaaagtatttgaatttataaaatttc 202  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||     
T  19810008 accaagttaccaacatttaatatatcaatctgagtatctttgtatatatcctgcaaagtttttacttatcatctaaaagtatttgaatttataaaatttg 19809909  T
Q  203 aacatgagttgt 214  Q
    ||||||||||||    
T  19809908 aacatgagttgt 19809897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 17061075 - 17060996
Alignment:
Q  1 tcattttccacgcattaacaccaagatgtcaattttctcttaa-aaaatgatagaactgttgggggaaacaaaatgaagc 79  Q
    ||||||||||   ||||||||||||||||||||||||| | || ||||||| | ||||||| ||||||||||||| ||||    
T  17061075 tcattttccaaaaattaacaccaagatgtcaattttctttcaacaaaatgacaaaactgttaggggaaacaaaataaagc 17060996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 22 - 81
Target Start/End: Complemental strand, 33563203 - 33563145
Alignment:
Q  22 caagatgtcaattttctcttaaaaaatgatagaactgttgggggaaacaaaatgaagcca 81  Q
    |||||||||||||||||||||| |||||  ||| ||||| || |||||||||||||||||    
T  33563203 caagatgtcaattttctcttaacaaatgtgagatctgtt-ggtgaaacaaaatgaagcca 33563145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 135 - 188
Target Start/End: Complemental strand, 45343437 - 45343382
Alignment:
Q  135 agtatctttgtatatatcctgcacagttttt--acttatcatctaaaagtatttga 188  Q
    |||||||||||||||||||||||  ||||||  || ||||||||||||||||||||    
T  45343437 agtatctttgtatatatcctgcattgtttttttacgtatcatctaaaagtatttga 45343382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University