View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7835_high_6 (Length: 239)

Name: NF7835_high_6
Description: NF7835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7835_high_6
NF7835_high_6
[»] chr7 (8 HSPs)
chr7 (17-239)||(18326212-18326434)
chr7 (25-105)||(22028627-22028707)
chr7 (17-104)||(16839373-16839460)
chr7 (30-105)||(22039950-22040025)
chr7 (31-104)||(16846456-16846529)
chr7 (25-102)||(22021391-22021468)
chr7 (132-189)||(16839306-16839363)
chr7 (132-189)||(16846389-16846446)
[»] chr2 (3 HSPs)
chr2 (32-85)||(554482-554535)
chr2 (17-101)||(10205439-10205523)
chr2 (32-81)||(5436836-5436885)
[»] chr4 (1 HSPs)
chr4 (23-85)||(53774837-53774899)


Alignment Details
Target: chr7 (Bit Score: 191; Significance: 1e-104; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 17 - 239
Target Start/End: Original strand, 18326212 - 18326434
Alignment:
Q  17 agaaagctcatttagttatatggcaaatgacacattatggagttgaagagtcttggagtcaattacttacgataaatcttcaaattatggcacattatgg 116  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||    
T  18326212 agaaagctcatttagttatatggcaaatgacacattacggagttgaagagtcttggagtcaattacttaagataaatcttcaaattatgacacattatgg 18326311  T
Q  117 agttgaacattatggcttggagaaatattttgattctcaatggttgcaattgcacctttctagaaattatgattcattggtattgataaaaaatcttaat 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||| ||    
T  18326312 agttgaacattatggcttggagaaatattttgattctcaatggttgccattgcacctttctagaaattatgattcattggtattgataaacaatcttgat 18326411  T
Q  217 gagctaccacttgtctataattt 239  Q
    || |||||| |||||||||||||    
T  18326412 gacctaccagttgtctataattt 18326434  T

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Target: chr7; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 25 - 105
Target Start/End: Original strand, 22028627 - 22028707
Alignment:
Q  25 catttagttatatggcaaatgacacattatggagttgaagagtcttggagtcaattacttacgataaatcttcaaattatg 105  Q
    ||||| ||||||||| |||||||  |||||||||||||||||||||||| ||||||||||| ||| | | |||||||||||    
T  22028627 cattttgttatatggaaaatgacggattatggagttgaagagtcttggactcaattacttaagattagttttcaaattatg 22028707  T

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Target: chr7; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 17 - 104
Target Start/End: Complemental strand, 16839460 - 16839373
Alignment:
Q  17 agaaagctcatttagttatatggcaaatgacacattatggagttgaagagtcttggagtcaattacttacgataaatcttcaaattat 104  Q
    ||||| ||||| | ||||||||| | |||||| ||||||||||| |||||||||||| |||||||| || |||| |||||||||||||    
T  16839460 agaaaactcatcttgttatatggaagatgacagattatggagttcaagagtcttggactcaattacgtaggatagatcttcaaattat 16839373  T

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Target: chr7; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 30 - 105
Target Start/End: Original strand, 22039950 - 22040025
Alignment:
Q  30 agttatatggcaaatgacacattatggagttgaagagtcttggagtcaattacttacgataaatcttcaaattatg 105  Q
    |||| ||||| | |||||| |||||||||||||||||||||||| ||||||||||| ||| ||| |||||||||||    
T  22039950 agttttatggaagatgacagattatggagttgaagagtcttggactcaattacttaagattaattttcaaattatg 22040025  T

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Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 31 - 104
Target Start/End: Complemental strand, 16846529 - 16846456
Alignment:
Q  31 gttatatggcaaatgacacattatggagttgaagagtcttggagtcaattacttacgataaatcttcaaattat 104  Q
    ||||||||| | |||||| ||||||||||| |||||||||||| |||||||| || |||| |||||||||||||    
T  16846529 gttatatggaagatgacagattatggagttcaagagtcttggactcaattacgtaggatagatcttcaaattat 16846456  T

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Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 25 - 102
Target Start/End: Original strand, 22021391 - 22021468
Alignment:
Q  25 catttagttatatggcaaatgacacattatggagttgaagagtcttggagtcaattacttacgataaatcttcaaatt 102  Q
    ||||| ||||||||||| ||||   |||||||||||||||| ||||||| |||||||||||  || ||||||||||||    
T  22021391 catttggttatatggcagatgatggattatggagttgaagaatcttggactcaattacttaaaatcaatcttcaaatt 22021468  T

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Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 132 - 189
Target Start/End: Complemental strand, 16839363 - 16839306
Alignment:
Q  132 cttggagaaatattttgattctcaatggttgcaattgcacctttctagaaattatgat 189  Q
    |||||||||| | ||| ||||||  ||||||| |||||||||||||| ||||||||||    
T  16839363 cttggagaaaaaatttcattctcggtggttgccattgcacctttctaaaaattatgat 16839306  T

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Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 132 - 189
Target Start/End: Complemental strand, 16846446 - 16846389
Alignment:
Q  132 cttggagaaatattttgattctcaatggttgcaattgcacctttctagaaattatgat 189  Q
    |||||||||| | ||| ||||||  ||||||| |||||||||||||| ||||||||||    
T  16846446 cttggagaaaaaatttcattctcggtggttgccattgcacctttctaaaaattatgat 16846389  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 32 - 85
Target Start/End: Original strand, 554482 - 554535
Alignment:
Q  32 ttatatggcaaatgacacattatggagttgaagagtcttggagtcaattactta 85  Q
    ||||||||||||||| | | ||||||||| |||||||||||| |||||||||||    
T  554482 ttatatggcaaatgatagaatatggagttaaagagtcttggactcaattactta 554535  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 101
Target Start/End: Complemental strand, 10205523 - 10205439
Alignment:
Q  17 agaaagctcatttagttatatggcaaatgacacattatggagttgaagagtcttggagtcaattacttacgataaatcttcaaat 101  Q
    ||||| ||||||| ||||||||| | |||||  | ||||| |||||||||||||||| |||| || ||| ||| |||||||||||    
T  10205523 agaaaactcattttgttatatggaagatgactgagtatggtgttgaagagtcttggactcaactagttaagattaatcttcaaat 10205439  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 32 - 81
Target Start/End: Complemental strand, 5436885 - 5436836
Alignment:
Q  32 ttatatggcaaatgacacattatggagttgaagagtcttggagtcaatta 81  Q
    |||||||||| |||||| | ||||||||||| |||||||||| |||||||    
T  5436885 ttatatggcagatgacaaaatatggagttgaggagtcttggaatcaatta 5436836  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 85
Target Start/End: Original strand, 53774837 - 53774899
Alignment:
Q  23 ctcatttagttatatggcaaatgacacattatggagttgaagagtcttggagtcaattactta 85  Q
    ||||||| ||||||||||||||||   | | |||||||||||||||||||| |||||| ||||    
T  53774837 ctcattttgttatatggcaaatgaaggaatttggagttgaagagtcttggactcaattcctta 53774899  T

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