View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7835_low_1 (Length: 1141)
Name: NF7835_low_1
Description: NF7835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7835_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 564; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 564; E-Value: 0
Query Start/End: Original strand, 16 - 747
Target Start/End: Original strand, 32221910 - 32222645
Alignment:
| Q |
16 |
agttacatcgttaagtttatgaatatatct-----cgtacaaaactcttaaaagagcaaatgaggaatatggtatcgttcgtcgtaacaaagagataatg |
110 |
Q |
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||||||||||||||||||||||||| |||| |||||||||||||||||||||| | ||||||||||||||||||||||||||| |||||||||||| |
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| T |
32221910 |
agttacatcgttaagtttatgaatagatcttggtacgtacaaaactcttaaaagagcgagtgaggaatatggtatcgttcgtcgtaataaagagataatg |
32222009 |
T |
|
| Q |
111 |
ttatctatatgcatatcgtaagatatgataaattatgagatataaagtgttagttgatattttaaagtgtagatgtgtttgtaaaatttcgtgtatgact |
210 |
Q |
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|||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||| |
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| T |
32222010 |
ttatctatatgcatatagtgagatatgataaattatgagatataaagtgttagttgatattttaaagtgtagatatgtttgtaaaatttcatgtatgact |
32222109 |
T |
|
| Q |
211 |
aacaattgtttgatgttgtacattttatgtgaaaaatgttatcatgaatggtgtgggtgttgctagggatttcgatatgatgcaaccatagaaatgagaa |
310 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||| || ||||||||| ||||||||||||||||||||| ||||||||||||| |
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| T |
32222110 |
aacaattgtttgatgctgtacattttatgtgaaaaatgttatcatgaatgatg--ggtgttgcttgggatttcgatatgatgcaactatagaaatgagaa |
32222207 |
T |
|
| Q |
311 |
ttgttcattccttttgagtggtataaatgaggagatagtttttatatactttcttgataattactctgtattatgagatgtcatgaaaatatacgagact |
410 |
Q |
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| T |
32222208 |
ttgttcattccttttgagtggtataaatgaggagatagtttttatatactttcttgataattactttgtattatgagatgtcatgaaaatatacgagact |
32222307 |
T |
|
| Q |
411 |
ctatcaaattacaatatcaactttgggtcgtgatatttggttagtctcctatttgcttatcaactttggttgtgtttcgctggggttgttggagaggaga |
510 |
Q |
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| T |
32222308 |
ctatcaaattacaatatcaactttgggtcgtgatatttgtttagtctcctatttgcctatcaactttgggtgtgtttcgctggggttgttggagaggtga |
32222407 |
T |
|
| Q |
511 |
ttggagatggagtattttaaaattgagtagtactaca-acattctctttctgtaacattctttaacttcgactttcttcttggataaaattcatgacgtt |
609 |
Q |
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||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| |||||| || | ||||||||||| |||||||||||||| |
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| T |
32222408 |
ttggagatggagtattttaaaattgagtagtactaaagacattctctttctgtaacattctctaactttgattctcttcttggatgaaattcatgacgtt |
32222507 |
T |
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| Q |
610 |
actacactttaaaaatgagtctcatataaagtgtcgatacccacttaagtttcacctagaagaaagagcattataaaaagagtgttcgtaa-atttcact |
708 |
Q |
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| T |
32222508 |
actacactttgaaaatgagtct-atataaaatgttgatatccacttaagtttcacctagaagaacaagcattataaaaagagtgttcgtaacatttcact |
32222606 |
T |
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| Q |
709 |
ttaaaatttatttgtttggttccaatttaacagagtaga |
747 |
Q |
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| T |
32222607 |
ttaaaatttatttgtttggttccaatttaatagagtaga |
32222645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 781 - 1130
Target Start/End: Original strand, 32222992 - 32223344
Alignment:
| Q |
781 |
tgccgtagataatcgatacaccttttccacatgcatgtttgacaaaaccataatatt---attatatatcattctcaaagcatccatcaaacattcatat |
877 |
Q |
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| T |
32222992 |
tgccgtagataatccatacaccttttccacatgcatgtttgacaaaaccataatattattattatatatcatcctcaaagcatccatcaaacattcatat |
32223091 |
T |
|
| Q |
878 |
tcatatagatactacaaatgcaacaaagttagtcccttctacatgcatttaattttcaaatacacatattccaatgtcacaatctgaccttgtagttaaa |
977 |
Q |
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| T |
32223092 |
tcatatagatactacaaatgcaacaaagttagtcccttctacatgcatttaattttcaaatacacatattccaatgtcacaatctgaccttgtagttaaa |
32223191 |
T |
|
| Q |
978 |
aatgagcttaacttgttctcttcatcatccttactactttgaagtaggaacaatgacatgtctgagcttgtttcatgcctatgatcttcttgactcaact |
1077 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32223192 |
aatgagcttaacttgttctcttcatcatccttactactctgaagtaggaacaatgacatgtctgagcttgtttcatgcctatgatcttcttgactcaact |
32223291 |
T |
|
| Q |
1078 |
gagaagccacaaacttgtcaagatccctccaatcagtcactttctctgatatt |
1130 |
Q |
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| T |
32223292 |
gagaagccacaaacttgtcaagatccctccaatcagtcactttctctgatatt |
32223344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 335 - 408
Target Start/End: Complemental strand, 35108330 - 35108257
Alignment:
| Q |
335 |
aaatgaggagatagtttttatatactttcttgataattactctgtattatgagatgtcatgaaaatatacgaga |
408 |
Q |
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|||||| |||| |||||||||||| |||||||||||| | | || ||| |||||| |||||||| ||||||||| |
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| T |
35108330 |
aaatgaagagaaagtttttatatattttcttgataataaatttgcattctgagatatcatgaaactatacgaga |
35108257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 100 - 162
Target Start/End: Complemental strand, 36956892 - 36956830
Alignment:
| Q |
100 |
aagagataatgttatctatatgcatatcgtaagatatgataaattatgagatataaagtgtta |
162 |
Q |
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|||||||||| | || |||||||| || ||||| |||||||||||||| ||||| |||||||| |
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| T |
36956892 |
aagagataatatgatttatatgcacatagtaaggtatgataaattatgtgatatgaagtgtta |
36956830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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