View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7835_low_11 (Length: 240)
Name: NF7835_low_11
Description: NF7835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7835_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 55303624 - 55303402
Alignment:
| Q |
1 |
tctaacgatagcttctccgcctcatacaaaattattgcnnnnnnngtttgtttgttgagatatataataaacagttaaacatattaattacttgattggt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55303624 |
tctaacgatagcttctccgcctcatacaaaattattgctttttttgtttgtttgttgagatatataataaacagttaaacatattaattacttgattggt |
55303525 |
T |
|
| Q |
101 |
ccatacaaaacaacaatattggctttagcattagagtgcgtgcgtaccttgacagttttctgggctacaaggcagtgaactattgatcaccttaccatat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55303524 |
ccatacaaaacaacaatattggctttagcattagagtgcgtgcgtaccttgacagttttctgggctacaaggcagtgaactattgatcaccttaccatat |
55303425 |
T |
|
| Q |
201 |
gtttccttgaataactcaacaat |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
55303424 |
gtttccttgaataactcaacaat |
55303402 |
T |
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