View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7835_low_13 (Length: 223)
Name: NF7835_low_13
Description: NF7835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7835_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 129; Significance: 6e-67; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 77 - 205
Target Start/End: Complemental strand, 8403703 - 8403575
Alignment:
| Q |
77 |
accttcttcaaggaaaatggagagtccaaaatcagtagctttaacagcagcattctcatcttttgaagcaagcaagaaattctcaggcttaagatcacga |
176 |
Q |
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| T |
8403703 |
accttcttcaaggaaaatggagagtccaaaatcagtagctttaacagcagcattctcatcttttgaagcaagcaagaaattctcaggcttaagatcacga |
8403604 |
T |
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| Q |
177 |
tgcataacacccataaaatgacacacatg |
205 |
Q |
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| T |
8403603 |
tgcataacacccataaaatgacacacatg |
8403575 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 101 - 199
Target Start/End: Complemental strand, 8405088 - 8404990
Alignment:
| Q |
101 |
tccaaaatcagtagctttaacagcagcattctcatcttttgaagcaagcaagaaattctcaggcttaagatcacgatgcataacacccataaaatgaca |
199 |
Q |
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| T |
8405088 |
tccaaaatcagtggctttcaaaggagccttatgatctttactagcaagcaagaaattctcaggcttaaggtccctatgcatgacccccataaaatgaca |
8404990 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 146 - 199
Target Start/End: Complemental strand, 55168322 - 55168269
Alignment:
| Q |
146 |
aagcaagaaattctcaggcttaagatcacgatgcataacacccataaaatgaca |
199 |
Q |
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| T |
55168322 |
aagcaagaaattctcaggcttcaaatcgcgatgcaaaacacccataaaatgaca |
55168269 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 201
Target Start/End: Complemental strand, 44509861 - 44509813
Alignment:
| Q |
153 |
aaattctcaggcttaagatcacgatgcataacacccataaaatgacaca |
201 |
Q |
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| T |
44509861 |
aaattctccggcttaagatcccgatgcataacaccattaacatgacaca |
44509813 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 76 - 199
Target Start/End: Complemental strand, 20501601 - 20501478
Alignment:
| Q |
76 |
taccttcttcaaggaaaatggagagtccaaaatcagtagctttaacagcagcattctcatcttttgaagcaagcaagaaattctcaggcttaagatcacg |
175 |
Q |
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|||||||||||| ||||| || | |||||||||||||| |||| | ||||| |||||||| ||| | |||||||||||| || || ||||| | |
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| T |
20501601 |
taccttcttcaatgaaaacagacaaaccaaaatcagtagccttaagaagtgcattttcatctttactagccaacaagaaattctctggtttcagatccct |
20501502 |
T |
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| Q |
176 |
atgcataacacccataaaatgaca |
199 |
Q |
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| T |
20501501 |
atgcataactcccataaaatgaca |
20501478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 184
Target Start/End: Complemental strand, 43453461 - 43453429
Alignment:
| Q |
152 |
gaaattctcaggcttaagatcacgatgcataac |
184 |
Q |
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|||||| |||||||||||||||||||||||||| |
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| T |
43453461 |
gaaattttcaggcttaagatcacgatgcataac |
43453429 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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