View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7835_low_2 (Length: 452)
Name: NF7835_low_2
Description: NF7835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7835_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 219; Significance: 1e-120; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 179 - 436
Target Start/End: Complemental strand, 33878686 - 33878435
Alignment:
| Q |
179 |
acattgggtaccatttattggttgtctttatatttgaattttaaacttatggagagaaagatttagaggataacacatatatatgttcattagaggataa |
278 |
Q |
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| T |
33878686 |
acattgggtgccatttattggttgtctttatatttgaattttaaacttatggagagaaagatttagaggataacacat------gtttattagaggataa |
33878593 |
T |
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| Q |
279 |
gcttagtgaggattcaagacttggccttcattaagagtactccaagaggataaaagtattggtaataagagggtgagctaccaaagattgacaaattggt |
378 |
Q |
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| T |
33878592 |
gcttagtgaggattcaagacttggccttcattaagagtactccaagaggataaaagtattggtaataagagggtgagctaccaaagattgacaaattggt |
33878493 |
T |
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| Q |
379 |
cttgtataatcttgcatcagaggttgagtccaaattatcgtttatacgtggtatagta |
436 |
Q |
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| T |
33878492 |
cttgtatgatcttgcataagaggttgagtccaaattatcgtttatacgtggtatagta |
33878435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 21 - 129
Target Start/End: Complemental strand, 33879057 - 33878949
Alignment:
| Q |
21 |
ttacggagaggataaagtaattttctagctcaatacaagtgtttgatctttcaatggaaagtgtatagaatatgcattacttgtgaatttcttcttcctc |
120 |
Q |
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| T |
33879057 |
ttacggagaggataaagtaattttctagctcaatacaagtgtttgatctttcaatggaaagtgtatagaatatgcattacttgtgaatttcttcttcctc |
33878958 |
T |
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| Q |
121 |
tctctaaca |
129 |
Q |
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| T |
33878957 |
tctctaaca |
33878949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 286 - 361
Target Start/End: Original strand, 45960847 - 45960922
Alignment:
| Q |
286 |
gaggattcaagacttggccttcattaagagtactccaagaggataaaagtattggtaataagagggtgagctacca |
361 |
Q |
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| T |
45960847 |
gaggattcaagacttggccttcattaagattacttcaagtggataaaagtattggtcataagagggtgagctacca |
45960922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 129 - 179
Target Start/End: Complemental strand, 33878853 - 33878803
Alignment:
| Q |
129 |
agtcaaataggatcgaaccgttatggagtatattccttgaaataataggca |
179 |
Q |
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| T |
33878853 |
agtcaaataggatcgaaccgttatggagtatattccttgaaataataggca |
33878803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 211 - 253
Target Start/End: Original strand, 45960791 - 45960833
Alignment:
| Q |
211 |
tttgaattttaaacttatggagagaaagatttagaggataaca |
253 |
Q |
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| T |
45960791 |
tttgaattttgaacttatggagagaaagctttagaggataaca |
45960833 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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